RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 5 ✖

bioproject 1

  • PRJNA540466 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4946576 4946576 PRJNA540466_S_NODE_13864_length_466_cov_6.269720_g13318_i0 PRJNA540466 13864 466 6.26972 29.2168952 Gammaretrovirus 153135 Viruses Viruses 737 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g13318 i0 100 85.2575107296137 399 0 86 0 9 407 3719 4117 Moloney murine leukemia virus, complete genome blastn 39730 737 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
7496540 7496540 PRJNA540466_S_NODE_246_length_1444_cov_18173.993435_g198_i1 PRJNA540466 246 1444 18173.993435 262432.4652014 root 1 Root_unresolved Root_unresolved 1940 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g198 i1 97.29 79.0706371191136 1144 30 79 1 152 1294 3749 2606 Moloney murine leukemia virus, complete genome blastn 114178 1940 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
8771479 8771479 PRJNA540466_S_NODE_24427_length_360_cov_40581.376307_g23878_i0 PRJNA540466 24427 360 40581.376307 146092.9547052 Gammaretrovirus 153135 Viruses Viruses 363 1.39e-95   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g23878 i0 95.197 63.5444444444444 229 11 64 0 8 236 4281 4509 Moloney murine leukemia virus, complete genome blastn 22876 363 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
18969964 18969964 PRJNA540466_S_NODE_34615_length_308_cov_45336.263830_g34066_i0 PRJNA540466 34615 308 45336.26383 139635.6925964 Gammaretrovirus 153135 Viruses Viruses 244 4.4199999999999996e-60   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g34066 i0 94.34 50.1655844155844 159 9 52 0 8 166 4281 4439 Moloney murine leukemia virus, complete genome blastn 15451 244 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
20244890 20244890 PRJNA540466_S_NODE_236_length_1452_cov_9227.519942_g198_i0 PRJNA540466 236 1452 9227.519942 133983.58955784 root 1 Root_unresolved Root_unresolved 1940 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g198 i0 97.29 78.6349862258953 1144 30 79 1 151 1293 2606 3749 Moloney murine leukemia virus, complete genome blastn 114178 1940 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;