RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 10 ✖

bioproject 1

  • PRJNA540466 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1783531 1783531 PRJNA540466_S_NODE_47522_length_270_cov_0.964467_g46973_i0 PRJNA540466 47522 270 0.964467 2.6040609 Periplaneta americana dicistro-like virus 3032225 Viruses Viruses 331 2.84e-86   NTclustered gi|2754804027|tpg|BK063169.1| 3032225 g46973 i0 93.013 0.848148148148148 229 13 85 3 40 268 4666 4441 TPA_asm: Periplaneta americana dicistro-like virus hypothetical protein gene, partial cds blastn 229 331 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Periplaneta americana dicistro-like virus
3058887 3058887 PRJNA540466_S_NODE_30703_length_325_cov_2.527778_g30154_i0 PRJNA540466 30703 325 2.527778 8.2152785 Hansenia oviformis nepovirus 3115769 Viruses Viruses 303 7.64e-78   NTclustered gi|2752247862|tpg|BK065088.1| 3115769 g30154 i0 84.211 3.28615384615385 323 40 97 10 1 316 7998 7680 TPA_asm: Hansenia oviformis nepovirus segment RNA1 polyprotein gene, complete cds blastn 1068 303 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Nepovirus Hansenia oviformis nepovirus
4335069 4335069 PRJNA540466_S_NODE_46784_length_271_cov_3.080808_g46235_i0 PRJNA540466 46784 271 3.080808 8.34898968 Grapevine wood holobiome associated narna-like virus 14 3398650 Viruses Viruses 56.5 0.002   NTclustered gi|2905035843|gb|PV021997.1| 3398650 g46235 i0 100 0.11070110701107 30 0 11 0 7 36 2110 2081 Grapevine wood holobiome associated narna-like virus 14 isolate grp14 segment RNA2 RdRp gene, complete cds blastn 30 56.5 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae   Grapevine wood holobiome associated narna-like virus 14
5611842 5611842 PRJNA540466_S_NODE_39565_length_291_cov_3.500000_g39016_i0 PRJNA540466 39565 291 3.5 10.185 Mitovirus sp. 2587224 Viruses Viruses 119 2.62e-22   NTclustered gi|1698234317|gb|MN033515.1| 2587224 g39016 i0 93.671 0.271477663230241 79 5 27 0 56 134 33 111 MAG: Mitovirus sp. isolate H1_Rhizo_26_FD_scaffold_6751 sequence blastn 79 119 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Mitovirus sp.
9436233 9436233 PRJNA540466_S_NODE_25808_length_351_cov_5.280576_g25259_i0 PRJNA540466 25808 351 5.280576 18.53482176 Mitovirus sp. 2587224 Viruses Viruses 174 6.78e-39   NTclustered gi|1698234317|gb|MN033515.1| 2587224 g25259 i0 94.643 2.75498575498575 112 6 32 0 200 311 112 1 MAG: Mitovirus sp. isolate H1_Rhizo_26_FD_scaffold_6751 sequence blastn 967 174 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Mitovirus sp.
11986593 11986593 PRJNA540466_S_NODE_19090_length_404_cov_4.939577_g18541_i0 PRJNA540466 19090 404 4.939577 19.95589108 Skokie dicistro-like virus 2789443 Viruses Viruses 645 1.3999999999999996e-180   NTclustered gi|2806502719|gb|PQ054859.1| 2789443 g18541 i0 99.438 1.88366336633663 356 0 88 1 1 354 4968 5323 MAG: Skokie dicistro-like virus isolate QJ5MS4721 genomic sequence blastn 761 645 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Skokie dicistro-like virus
13261877 13261877 PRJNA540466_S_NODE_40711_length_288_cov_1.079070_g40162_i0 PRJNA540466 40711 288 1.07907 3.1077216 Neurospora intermedia fusarivirus 1 2715688 Viruses Viruses 401 2.2999999999999994e-107   NTclustered gi|1908106092|dbj|LC530174.1| 2715688 g40162 i0 93.704 5.51736111111111 270 13 93 3 1 267 7732 7464 Neurospora intermedia fusarivirus 1 FGSC 2559 RNA, complete genome blastn 1589 401 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Fusariviridae   Neurospora intermedia fusarivirus 1
13261932 13261932 PRJNA540466_S_NODE_48091_length_268_cov_2.810256_g47542_i0 PRJNA540466 48091 268 2.810256 7.53148608 Agrostis stolonifera deltaflexivirus 1 2794416 Viruses Viruses 226 1.37e-54   NTclustered gi|2819071336|gb|PQ150543.1| 2794416 g47542 i0 87.437 3.92164179104478 199 22 74 3 2 198 8346 8149 MAG: Agrostis stolonifera deltaflexivirus 1 isolate Hebei_128 genomic sequence blastn 1051 226 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Deltaflexiviridae Deltaflexivirus Agrostis stolonifera deltaflexivirus 1
16421239 16421239 PRJNA540466_S_NODE_3733_length_731_cov_2.996960_g3377_i0 PRJNA540466 3733 731 2.99696 21.9077776 Viruses 10239 Viruses Viruses 65.8 9.4e-6   NTclustered gi|2165835433|emb|OV196499.1| 2697049 g3377 i0 95.238 14.7318741450068 42 1 6 1 680 721 30124 30164 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 10769 65.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
19633994 19633994 PRJNA540466_S_NODE_21456_length_383_cov_1.964516_g20907_i0 PRJNA540466 21456 383 1.964516 7.52409628 Potexvirus ecscacti 3433821 Viruses Viruses 680 0   NTclustered gi|1110865423|gb|KX883791.1| 112227 g20907 i0 98.695 17.1671018276762 383 5 100 0 1 383 6153 6535 Cactus virus X strain SCM51431 ORF1, ORF2, ORF3, and ORF4 genes, complete cds blastn 6575 680 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus ecscacti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;