RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_kingdom = "Bamfordvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bamfordvirae · 3 ✖

bioproject 1

  • PRJNA540466 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7496597 7496597 PRJNA540466_S_NODE_5386_length_660_cov_8.005111_g4963_i0 PRJNA540466 5386 660 8.005111 52.8337326 root 1 Root_unresolved Root_unresolved 747 0   NTclustered gi|2288721861|gb|OP218818.1| 10535 g4963 i0 100 100.422727272727 404 0 100 0 1 404 1631 1228 Unidentified adenovirus strain CHOP Ad5 blastn 66279 747 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus unidentified adenovirus
10046928 10046928 PRJNA540466_S_NODE_5988_length_639_cov_12.791519_g5547_i0 PRJNA540466 5988 639 12.791519 81.73780641 root 1 Root_unresolved Root_unresolved 876 0   NTclustered gi|2616465679|gb|OR735196.1| 10515 g5547 i0 99.381 88.0985915492958 485 0 94 2 39 522 4069 3587 Human adenovirus 2 isolate HAdV-C2/USA/11A6/2013, complete genome blastn 56295 883 0.9920724801812 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
25344825 25344825 PRJNA540466_S_NODE_58380_length_249_cov_0.875000_g57831_i0 PRJNA540466 58380 249 0.875 2.17875 root 1 Root_unresolved Root_unresolved 460 3.16e-125   NTclustered gi|2288721861|gb|OP218818.1| 10535 g57831 i0 100 100 249 0 100 0 1 249 1760 2008 Unidentified adenovirus strain CHOP Ad5 blastn 24900 460 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus unidentified adenovirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;