RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 8 ✖

bioproject 1

  • PRJNA540466 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
508238 508238 PRJNA540466_S_NODE_53601_length_257_cov_1.255435_g53052_i0 PRJNA540466 53601 257 1.255435 3.22646795 Chlamydomonas reinhardtii 3055 Plants Plants 154 6.23e-33   NTclustered gi|2082263148|ref|XM_001693658.2| 3055 g53052 i0 81.152 11.2529182879377 191 36 74 0 1 191 545 735 Chlamydomonas reinhardtii ribosomal protein S3a (CHLRE_13g568650v5), mRNA blastn 2892 154 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
6885716 6885716 PRJNA540466_S_NODE_40266_length_289_cov_2.097222_g39717_i0 PRJNA540466 40266 289 2.097222 6.06097158 Ulva prolifera 3117 Plants Plants 67.6 9.55e-7   NTclustered gi|254558247|gb|GQ285222.1| 3117 g39717 i0 95.238 0.934256055363322 42 2 19 0 225 266 1976 1935 Ulva prolifera heat shock protein 70 mRNA, complete cds blastn 270 67.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva prolifera
10711940 10711940 PRJNA540466_S_NODE_19569_length_399_cov_21.257669_g19020_i0 PRJNA540466 19569 399 21.257669 84.81809931 Trebouxia sp. A1-2 2608996 Plants Plants 102 3.74e-17   NTclustered gi|1825511251|gb|MN642622.1| 2608996 g19020 i0 85.294 1.49624060150376 102 12 26 2 211 312 86227 86129 Trebouxia sp. A1-2 mitochondrion, complete genome blastn 597 102 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2
11321490 11321490 PRJNA540466_S_NODE_20889_length_388_cov_1.546032_g20340_i0 PRJNA540466 20889 388 1.546032 5.99860416 Chlorophyta 3041 Plants Plants 84.2 1.31e-11   NTclustered gi|2724824566|gb|PP746563.1| 3171 g20340 i0 86.667 30.4072164948454 75 10 19 0 60 134 2789 2863 Myrmecia israelensis culture UTEX:1181 mitochondrion, complete genome blastn 11798 84.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
11986893 11986893 PRJNA540466_S_NODE_50310_length_263_cov_4.089474_g49761_i0 PRJNA540466 50310 263 4.089474 10.75531662 Chlorella variabilis 554065 Plants Plants 71.3 6.63e-8   NTclustered gi|552839912|ref|XM_005849855.1| 554065 g49761 i0 76.027 0.665399239543726 146 30 55 4 9 152 490 632 Chlorella variabilis hypothetical protein (CHLNCDRAFT_56085) mRNA, complete cds blastn 175 71.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
13261795 13261795 PRJNA540466_S_NODE_31451_length_322_cov_1.100402_g30902_i0 PRJNA540466 31451 322 1.100402 3.54329444 Monoraphidium neglectum 145388 Plants Plants 291 5.88e-74   NTclustered gi|926798264|ref|XM_014051102.1| 145388 g30902 i0 83.882 37.7701863354037 304 49 94 0 1 304 522 219 Monoraphidium neglectum 60S ribosomal protein L18-3 mRNA blastn 12162 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
15146554 15146554 PRJNA540466_S_NODE_52012_length_260_cov_1.534759_g51463_i0 PRJNA540466 52012 260 1.534759 3.9903734 Chlamydomonadales 3042 Plants Plants 442 1.1999999999999999e-119   NTclustered gi|1212783794|gb|MF083691.1| 3055 g51463 i0 97.308 162.7 260 7 100 0 1 260 37376 37635 Chlamydomonas reinhardtii strain CC-1051 M18 (ac9) mt+ chloroplast, complete genome blastn 42302 442 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22185081 22185081 PRJNA540466_S_NODE_71478_length_204_cov_7.664122_g70929_i0 PRJNA540466 71478 204 7.664122 15.63480888 Prototheca wickerhamii 3111 Plants Plants 211 2.77e-50   NTclustered gi|11497452|ref|NC_001613.1| 3111 g70929 i0 94.203 5.14705882352941 138 8 68 0 44 181 52716 52579 Prototheca wickerhamii mitochondrion, complete genome blastn 1050 211 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;