RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA540466" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA540466 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3059101 3059101 PRJNA540466_S_NODE_56343_length_252_cov_0.905028_g55794_i0 PRJNA540466 56343 252 0.905028 2.28067056 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 110 1.34e-19   NTclustered gi|1958123529|gb|CP065016.1| 2026720 g55794 i0 98.413 5.11507936507936 63 0 25 1 23 84 465458 465396 Candidatus Saccharibacteria bacterium isolate Vibo_18-Q3-R45-57_BAT3C.117_fly chromosome, complete genome blastn 1289 110 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
10712209 10712209 PRJNA540466_S_NODE_47129_length_270_cov_5.598985_g46580_i0 PRJNA540466 47129 270 5.598985 15.1172595 Candidatus Mycosynbacter amalyticus 2665156 Bacteria Bacteria 300 8e-77   NTclustered gi|1799615131|gb|CP045921.1| 2665156 g46580 i0 92.788 168.02962962963 208 14 77 1 41 248 220099 219893 Candidatus Mycosynbacter amalyticus isolate JR1 chromosome, complete genome blastn 45368 300 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Mycosynbacter Candidatus Mycosynbacter amalyticus
21520543 21520543 PRJNA540466_S_NODE_65497_length_236_cov_2.386503_g64948_i0 PRJNA540466 65497 236 2.386503 5.63214708 Candidatus Saccharimonas 1331051 Bacteria Bacteria 198 2.57e-46   NTclustered gi|499052612|gb|CP005957.1| 1332188 g64948 i0 92.143 36.2415254237288 140 11 59 0 97 236 694916 694777 Candidatus Saccharimonas aalborgensis isolate TM71 chromosome, complete genome blastn 8553 198 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas aalborgensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;