RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA534016" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA534016 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11986299 11986299 PRJNA534016_P_NODE_5890_length_344_cov_1.638376_g5800_i0 PRJNA534016 5890 344 1.638376 5.63601344 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.033   NTclustered gi|66826106|ref|XM_641316.1| 352472 g5800 i0 100 0.0813953488372093 28 0 8 0 78 105 1976 1949 Dictyostelium discoideum AX4 7-fold repeat in clathrin and VPS proteins repeat-containing protein (vps18) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
13261259 13261259 PRJNA534016_P_NODE_13031_length_255_cov_1.692308_g12941_i0 PRJNA534016 13031 255 1.692308 4.3153854 Dictyostelium discoideum 44689 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|66802076|ref|XM_629830.1| 352472 g12941 i0 100 0.117647058823529 30 0 12 0 84 113 512 541 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0292106) mRNA, complete cds blastn 30 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
14536266 14536266 PRJNA534016_P_NODE_13292_length_253_cov_1.711111_g13202_i0 PRJNA534016 13292 253 1.711111 4.32911083 Entamoeba dispar 46681 Evosea other_Eukaryota 281 2.69e-71   NTclustered gi|167394534|ref|XM_001740954.1| 370354 g13202 i0 87.654 97.9604743083004 243 28 96 2 5 246 235 476 Entamoeba dispar SAW760 actin, putative (EDI_043510), partial mRNA blastn 24784 281 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;