RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA534016" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA534016 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
507588 507588 PRJNA534016_P_NODE_2361_length_534_cov_1.624729_g2272_i0 PRJNA534016 2361 534 1.624729 8.67605286 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 374 9.849999999999999e-99   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g2272 i0 79.707 32.9625468164794 547 88 100 20 1 534 41592 42128 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 17602 374 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
5611336 5611336 PRJNA534016_P_NODE_3905_length_416_cov_2.297376_g3815_i0 PRJNA534016 3905 416 2.297376 9.55708416 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 268 3.6499999999999996e-67   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g3815 i0 85.882 10.7908653846154 255 33 61 3 118 371 42634 42382 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 4489 268 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;