RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA534016" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA534016 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1782939 1782939 PRJNA534016_P_NODE_4342_length_396_cov_2.281734_g4252_i0 PRJNA534016 4342 396 2.281734 9.03566664 Batrachochytrium dendrobatidis 109871 Fungi Fungi 237 9.75e-58   NTclustered gi|575480435|ref|XM_006679449.1| 684364 g4252 i0 81.481 34.8712121212121 297 47 74 6 1 293 317 25 Batrachochytrium dendrobatidis JAM81 peptidyl-prolyl cis-trans isomerase (BATDEDRAFT_30184), partial mRNA blastn 13809 237 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
19633516 19633516 PRJNA534016_P_NODE_10536_length_275_cov_1.193069_g10446_i0 PRJNA534016 10536 275 1.193069 3.28093975 Synchytrium sp. 1971732 Fungi Fungi 87.9 6.93e-13   NTclustered gi|1168020523|gb|KY800404.1| 1971732 g10446 i0 82.178 0.367272727272727 101 18 37 0 147 247 906 1006 Synchytrium sp. voucher BPI 893319 large subunit ribosomal RNA gene, partial sequence blastn 101 87.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;