RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA534016" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA534016 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3058510 3058510 PRJNA534016_P_NODE_7923_length_301_cov_2.241228_g7833_i0 PRJNA534016 7923 301 2.241228 6.74609628 Fretibacterium fastidiosum 651822 Bacteria Bacteria 372 1.89e-98   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g7833 i0 89.073 56.0498338870432 302 30 100 3 1 301 69700 69401 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 16871 372 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
16421055 16421055 PRJNA534016_P_NODE_16793_length_244_cov_1.321637_g16703_i0 PRJNA534016 16793 244 1.321637 3.22479428 Deinococcus 1298 Bacteria Bacteria 451 1.86e-122   NTclustered gi|2425458098|gb|OQ221948.1| 47478 g16703 i0 100 102.868852459016 244 0 100 0 1 244 712 469 Deinococcus sp. strain 934 16S ribosomal RNA gene, partial sequence blastn 25100 451 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
23459728 23459728 PRJNA534016_P_NODE_17239_length_243_cov_1.358824_g17149_i0 PRJNA534016 17239 243 1.358824 3.30194232 Fretibacterium fastidiosum 651822 Bacteria Bacteria 394 3.16e-105   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g17149 i0 95.885 2 243 10 100 0 1 243 851207 850965 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 486 394 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;