RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA534016" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA534016 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10711617 10711617 PRJNA534016_P_NODE_4129_length_405_cov_4.298193_g4039_i0 PRJNA534016 4129 405 4.298193 17.40768165 Entosiphon sulcatum 101493 Euglenozoa other_Eukaryota 339 2.66e-88   NTclustered gi|5733381|gb|AF095840.1|AF095840 101493 g4039 i0 82.723 95.1481481481482 382 64 94 2 24 404 917 537 Entosiphon sulcatum b-tubulin (tub-b) gene, complete cds blastn 38535 339 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sulcatum
18358963 18358963 PRJNA534016_P_NODE_14075_length_250_cov_0.988701_g13985_i0 PRJNA534016 14075 250 0.988701 2.4717525 Euglena gracilis 3039 Euglenozoa other_Eukaryota 134 7.860000000000001e-27   NTclustered gi|1863320058|gb|MT583911.1| 3039 g13985 i0 87.179 7.704 117 15 47 0 35 151 225 109 Euglena gracilis 60S large subunit ribosomal protein eL42 mRNA, complete cds blastn 1926 134 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
19633647 19633647 PRJNA534016_P_NODE_3896_length_417_cov_1.744186_g3806_i0 PRJNA534016 3896 417 1.744186 7.27325562 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 69.4 3.98e-7   NTclustered gi|1624752183|ref|XM_029027020.1| 67003 g3806 i0 93.617 1.1294964028777 47 1 11 2 179 223 1259 1213 Trypanosoma theileri uncharacterized protein (TM35_000211700), partial mRNA blastn 471 69.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;