RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA534016" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA534016 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
507588 507588 PRJNA534016_P_NODE_2361_length_534_cov_1.624729_g2272_i0 PRJNA534016 2361 534 1.624729 8.67605286 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 374 9.849999999999999e-99   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g2272 i0 79.707 32.9625468164794 547 88 100 20 1 534 41592 42128 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 17602 374 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
5611336 5611336 PRJNA534016_P_NODE_3905_length_416_cov_2.297376_g3815_i0 PRJNA534016 3905 416 2.297376 9.55708416 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 268 3.6499999999999996e-67   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g3815 i0 85.882 10.7908653846154 255 33 61 3 118 371 42634 42382 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 4489 268 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
11986299 11986299 PRJNA534016_P_NODE_5890_length_344_cov_1.638376_g5800_i0 PRJNA534016 5890 344 1.638376 5.63601344 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.033   NTclustered gi|66826106|ref|XM_641316.1| 352472 g5800 i0 100 0.0813953488372093 28 0 8 0 78 105 1976 1949 Dictyostelium discoideum AX4 7-fold repeat in clathrin and VPS proteins repeat-containing protein (vps18) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
13261259 13261259 PRJNA534016_P_NODE_13031_length_255_cov_1.692308_g12941_i0 PRJNA534016 13031 255 1.692308 4.3153854 Dictyostelium discoideum 44689 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|66802076|ref|XM_629830.1| 352472 g12941 i0 100 0.117647058823529 30 0 12 0 84 113 512 541 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0292106) mRNA, complete cds blastn 30 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
14536253 14536253 PRJNA534016_P_NODE_11972_length_263_cov_2.942105_g11882_i0 PRJNA534016 11972 263 2.942105 7.73773615 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 320 5.96e-83   NTclustered gi|221185864|gb|FJ577811.1| 590481 g11882 i0 94.286 74.0342205323194 210 10 79 2 52 259 786 995 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 19471 320 1 Eukaryota Amoebozoa             uncultured Amoebozoa
14536266 14536266 PRJNA534016_P_NODE_13292_length_253_cov_1.711111_g13202_i0 PRJNA534016 13292 253 1.711111 4.32911083 Entamoeba dispar 46681 Evosea other_Eukaryota 281 2.69e-71   NTclustered gi|167394534|ref|XM_001740954.1| 370354 g13202 i0 87.654 97.9604743083004 243 28 96 2 5 246 235 476 Entamoeba dispar SAW760 actin, putative (EDI_043510), partial mRNA blastn 24784 281 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
17696250 17696250 PRJNA534016_P_NODE_8974_length_287_cov_1.443925_g8884_i0 PRJNA534016 8974 287 1.443925 4.14406475 Amoebidae 35218 Tubulinea other_Eukaryota 303 6.64e-78   NTclustered gi|17897590|emb|AJ314605.1| 160820 g8884 i0 89.344 51.3728222996516 244 22 84 3 47 287 1507 1749 Amoeba leningradensis partial 16S rRNA gene, strain CCAP 1503/6 blastn 14744 303 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba leningradensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;