RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA533623" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA533623 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3056728 3056728 PRJNA533623_P_NODE_10463_length_725_cov_11.579819_g8892_i0 PRJNA533623 10463 725 11.579819 83.95368775 Thermodesulfomicrobium sp. WS 3004129 Bacteria Bacteria 499 2.16e-136   NTclustered gi|2416254156|dbj|AP027130.1| 3004129 g8892 i0 87.822 13.0634482758621 427 50 59 2 37 462 1580290 1579865 Thermodesulfomicrobium sp. WS DNA, complete genome blastn 9471 499 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Thermodesulfomicrobium Thermodesulfomicrobium sp. WS
3056765 3056765 PRJNA533623_P_NODE_12223_length_673_cov_15.846405_g10587_i0 PRJNA533623 12223 673 15.846405 106.64630565 Thermodesulfomicrobium sp. WS 3004129 Bacteria Bacteria 165 8.26e-36   NTclustered gi|2416254156|dbj|AP027130.1| 3004129 g10587 i0 89.13 1.82020802377415 138 7 20 4 40 171 2033805 2033670 Thermodesulfomicrobium sp. WS DNA, complete genome blastn 1225 165 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Thermodesulfomicrobium Thermodesulfomicrobium sp. WS
4333257 4333257 PRJNA533623_P_NODE_32184_length_396_cov_15.301493_g30413_i0 PRJNA533623 32184 396 15.301493 60.59391228 Desulfobacterales bacterium 2044940 Bacteria Bacteria 122 2.85e-23   NTclustered gi|2108083302|gb|CP070746.1| 2044940 g30413 i0 96 51.8106060606061 75 3 19 0 73 147 3291005 3290931 MAG: Desulfobacterales bacterium isolate bin36 chromosome blastn 20517 122 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
4334243 4334243 PRJNA533623_P_NODE_78444_length_196_cov_5.348148_g76663_i0 PRJNA533623 78444 196 5.348148 10.48237008 Maridesulfovibrio sp. 2795000 Bacteria Bacteria 121 4.579999999999999e-23   NTclustered gi|2621784475|emb|OY780933.1| 2795000 g76663 i0 86.364 4.22959183673469 110 15 56 0 86 195 1291030 1290921 MAG: Maridesulfovibrio sp. isolate 689ab4ac-13ae-4e01-b39b-c4f5232e5781 genome assembly, chromosome: 1 blastn 829 121 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Maridesulfovibrio Maridesulfovibrio sp.
4946000 4946000 PRJNA533623_P_NODE_32704_length_392_cov_19.619335_g30933_i0 PRJNA533623 32704 392 19.619335 76.9077932 Pseudomonadati 3379134 Bacteria Bacteria 422 2.48e-113   NTclustered gi|779731694|gb|CP010430.1| 35554 g30933 i0 87.466 49.1020408163265 367 45 93 1 19 384 845899 846265 Geobacter sulfurreducens strain AM-1 genome blastn 19248 422 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;