RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA533623" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA533623 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6221637 6221637 PRJNA533623_P_NODE_54385_length_275_cov_40.481308_g52606_i0 PRJNA533623 54385 275 40.481308 111.323597 Xiphinema 46002 Nematoda Nematoda 340 4.82e-89   NTclustered gi|32527557|gb|AY210845.1| 70223 g52606 i0 91.235 54.2618181818182 251 21 91 1 1 251 2816 2567 Xiphinema rivesi 28S ribosomal RNA gene, partial sequence blastn 14922 340 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Xiphinema Xiphinema rivesi
7496214 7496214 PRJNA533623_P_NODE_64486_length_238_cov_2.033898_g62705_i0 PRJNA533623 64486 238 2.033898 4.84067724 Longidoridae 46001 Nematoda Nematoda 132 2.67e-26   NTclustered gi|32527557|gb|AY210845.1| 70223 g62705 i0 94.186 36.5672268907563 86 5 36 0 1 86 2801 2716 Xiphinema rivesi 28S ribosomal RNA gene, partial sequence blastn 8703 132 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Xiphinema Xiphinema rivesi
9434351 9434351 PRJNA533623_P_NODE_20908_length_509_cov_15.660714_g19161_i0 PRJNA533623 20908 509 15.660714 79.71303426 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.014   NTclustered gi|1557394408|emb|LR031564.1| 45931 g19161 i0 94.444 0.0707269155206287 36 1 7 1 1 35 23 58 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 36 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
23459277 23459277 PRJNA533623_P_NODE_65159_length_235_cov_31.304598_g63378_i0 PRJNA533623 65159 235 31.304598 73.5658053 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.021   NTclustered gi|1557394408|emb|LR031564.1| 45931 g63378 i0 100 0.119148936170213 28 0 12 0 208 235 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;