RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA533623" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA533623 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6884014 6884014 PRJNA533623_P_NODE_33986_length_382_cov_18.258567_g32215_i0 PRJNA533623 33986 382 18.258567 69.74772594 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 215 4.39e-51   NTclustered gi|226088597|dbj|AP009153.1| 379066 g32215 i0 83.333 12.761780104712 234 38 61 1 26 258 412845 412612 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 4875 215 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
19631964 19631964 PRJNA533623_P_NODE_16876_length_572_cov_18.823875_g15151_i0 PRJNA533623 16876 572 18.823875 107.672565 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 270 1.43e-67   NTclustered gi|575456455|gb|CP007128.1| 861299 g15151 i0 91.753 9.46153846153846 194 16 52 0 355 548 1768200 1768007 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 5412 270 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
23459511 23459511 PRJNA533623_P_NODE_76979_length_203_cov_0.915493_g75198_i0 PRJNA533623 76979 203 0.915493 1.85845079 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 252 1.63e-62   NTclustered gi|2874253978|emb|OY970303.1| 412054 g75198 i0 90.526 0.935960591133005 190 18 94 0 1 190 3155765 3155954 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 190 252 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;