RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA533623" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJNA533623 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1781610 1781610 PRJNA533623_P_NODE_30262_length_412_cov_3.470085_g28492_i0 PRJNA533623 30262 412 3.470085 14.2967502 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 148 4.91e-31   NTclustered gi|551626087|ref|XM_005793063.1| 280463 g28492 i0 77.007 1.06067961165049 274 54 65 7 9 277 1399 1668 Emiliania huxleyi CCMP1516 chaperonin complex component, TCP-1 eta subunit partial mRNA blastn 437 148 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
6884655 6884655 PRJNA533623_P_NODE_6366_length_913_cov_149.667840_g5047_i0 PRJNA533623 6366 913 149.66784 1366.4673792 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 920 0   NTclustered gi|551583414|ref|XM_005777087.1| 280463 g5047 i0 87.929 85.4107338444688 787 88 86 7 1 782 4794 4010 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 77980 920 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
14535186 14535186 PRJNA533623_P_NODE_35012_length_375_cov_18.624204_g33240_i0 PRJNA533623 35012 375 18.624204 69.840765 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 215 4.3e-51   NTclustered gi|551551396|ref|XM_005763098.1| 280463 g33240 i0 79.538 2.4 303 60 81 2 27 328 2653 2954 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 900 215 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
15810126 15810126 PRJNA533623_P_NODE_8893_length_784_cov_34.250346_g7395_i0 PRJNA533623 8893 784 34.250346 268.52271264 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 60.2 4.7e-4   NTclustered gi|551572362|ref|XM_005771971.1| 280463 g7395 i0 97.143 0.247448979591837 35 1 4 0 483 517 371 405 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 194 60.2 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;