RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA533114" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA533114 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8157263 8157263 PRJNA533114_P_NODE_101327_length_248_cov_0.880000_g101075_i0 PRJNA533114 101327 248 0.88 2.1824 Borreliella lanei 373540 Bacteria Bacteria 58.4 4.82e-4   NTclustered gi|2537428790|gb|CP124054.1| 373540 g101075 i0 100 5.33870967741935 31 0 13 0 182 212 49344 49314 Borreliella lanei strain CA-28-91 chromosome, complete genome blastn 1324 58.4 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella lanei
22181137 22181137 PRJNA533114_P_NODE_105978_length_246_cov_1.635838_g105726_i0 PRJNA533114 105978 246 1.635838 4.02416148 Brachyspira murdochii 84378 Bacteria Bacteria 95.3 3.64e-15   NTclustered gi|296016874|gb|CP001959.1| 526224 g105726 i0 81.356 0.739837398373984 118 20 48 2 63 179 3163572 3163688 Brachyspira murdochii DSM 12563, complete genome blastn 182 95.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira murdochii
22182287 22182287 PRJNA533114_P_NODE_82958_length_266_cov_4.632124_g82706_i0 PRJNA533114 82958 266 4.632124 12.32144984 Treponema saccharophilum 165 Bacteria Bacteria 93.5 1.43e-14   NTclustered gi|2581918939|dbj|AP025288.1| 165 g82706 i0 89.189 5.2406015037594 74 8 28 0 43 116 373822 373749 Treponema saccharophilum JCM 32279 DNA, complete genome blastn 1394 93.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema saccharophilum
24730988 24730988 PRJNA533114_P_NODE_36660_length_381_cov_0.987013_g36408_i0 PRJNA533114 36660 381 0.987013 3.76051953 Thiospirochaeta perfilievii 252967 Bacteria Bacteria 60.2 2.17e-4   NTclustered gi|1735508175|gb|CP035807.1| 252967 g36408 i0 100 1.82677165354331 32 0 8 0 66 97 3526524 3526493 Thiospirochaeta perfilievii strain P chromosome, complete genome blastn 696 60.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Thiospirochaeta Thiospirochaeta perfilievii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;