RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA533114" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA533114 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1779780 1779780 PRJNA533114_P_NODE_109782_length_245_cov_0.895349_g109530_i0 PRJNA533114 109782 245 0.895349 2.19360505 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.022   NTclustered gi|2806446952|ref|XM_068498964.1| 1144522 g109530 i0 100 0.114285714285714 28 0 11 0 93 120 249 222 Tritrichomonas foetus uncharacterized protein (TRFO_16424), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
3055473 3055473 PRJNA533114_P_NODE_11563_length_664_cov_2.609137_g11325_i0 PRJNA533114 11563 664 2.609137 17.32466968 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 84.2 2.34e-11   NTclustered gi|2806440908|ref|XM_068514153.1| 1144522 g11325 i0 89.552 1.05421686746988 67 5 10 2 325 390 219 154 Tritrichomonas foetus DnaJ subfamily B member 5 (TRFO_42130), partial mRNA blastn 700 84.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
8158238 8158238 PRJNA533114_P_NODE_64467_length_297_cov_1.375000_g64215_i0 PRJNA533114 64467 297 1.375 4.08375 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 56.5 0.002   NTclustered gi|2794863932|ref|XM_067915075.1| 135588 g64215 i0 92.683 0.138047138047138 41 0 14 2 144 184 1325 1288 Histomonas meleagridis beta-tubulin (GO595_002193), partial mRNA blastn 41 56.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;