RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA533114" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA533114 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18969130 18969130 PRJNA533114_P_NODE_9975_length_714_cov_1.190328_g9747_i0 PRJNA533114 9975 714 1.190328 8.49894192 Corallococcus 83461 Bacteria Bacteria 54.7 0.02   NTclustered gi|337255776|gb|CP002830.1| 35 g9747 i0 100 0.103641456582633 29 0 4 0 141 169 1089245 1089217 Myxococcus macrosporus strain HW-1, complete genome blastn 74 54.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus macrosporus
19631107 19631107 PRJNA533114_P_NODE_41136_length_362_cov_1.799308_g40884_i0 PRJNA533114 41136 362 1.799308 6.51349496 Nannocystis punicea 2995304 Bacteria Bacteria 230 1.4799999999999995e-55   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g40884 i0 83.071 69.8950276243094 254 41 70 2 1 253 5377288 5377540 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 25302 230 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
25343874 25343874 PRJNA533114_P_NODE_108180_length_246_cov_0.890173_g107928_i0 PRJNA533114 108180 246 0.890173 2.18982558 Bacteria 2 Bacteria Bacteria 246 9.5e-61   NTclustered gi|196170270|gb|CP001131.1| 447217 g107928 i0 85.714 76.3414634146341 238 29 96 5 11 246 3464614 3464848 Anaeromyxobacter sp. K, complete genome blastn 18780 246 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. K

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;