RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA533114" and tax_phylum = "Haptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Haptophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA533114 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20907196 20907196 PRJNA533114_P_NODE_43217_length_355_cov_0.975177_g42965_i0 PRJNA533114 43217 355 0.975177 3.46187835 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 320 8.34e-83   NTclustered gi|551577960|ref|XM_005774525.1| 280463 g42965 i0 85.531 90.3211267605634 311 40 87 3 1 310 549 243 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 32064 320 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
23456765 23456765 PRJNA533114_P_NODE_12879_length_631_cov_1.116487_g12637_i0 PRJNA533114 12879 631 1.116487 7.04503297 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 455 4.09e-123   NTclustered gi|551539306|ref|XM_005758086.1| 280463 g12637 i0 81.282 35.3882725832013 577 94 90 13 7 576 740 171 Emiliania huxleyi CCMP1516 receptor of activated protein kinase C partial mRNA blastn 22330 455 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
24730999 24730999 PRJNA533114_P_NODE_37480_length_377_cov_1.496711_g37228_i0 PRJNA533114 37480 377 1.496711 5.64260047 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 235 3.3199999999999994e-57   NTclustered gi|551548842|ref|XM_005762007.1| 280463 g37228 i0 81.164 37.4668435013263 292 55 77 0 7 298 395 104 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 14125 235 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;