RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA533114" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA533114 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5608794 5608794 PRJNA533114_P_NODE_37125_length_379_cov_0.885621_g36873_i0 PRJNA533114 37125 379 0.885621 3.35650359 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 54.7 0.01   NTclustered gi|1752383894|ref|XM_030995016.1| 7668 g36873 i0 100 0.306068601583113 29 0 8 0 299 327 6505 6533 PREDICTED: Strongylocentrotus purpuratus afadin (LOC589923), transcript variant X4, mRNA blastn 116 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
11983924 11983924 PRJNA533114_P_NODE_46450_length_344_cov_1.420664_g46198_i0 PRJNA533114 46450 344 1.420664 4.88708416 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 58.4 6.99e-4   NTclustered gi|1752404739|ref|XM_030974717.1| 7668 g46198 i0 97.059 1.9593023255814 34 1 10 0 107 140 971 1004 PREDICTED: Strongylocentrotus purpuratus dual specificity protein kinase CLK2 (LOC592598), mRNA blastn 674 58.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
18356407 18356407 PRJNA533114_P_NODE_33435_length_397_cov_1.444444_g33183_i0 PRJNA533114 33435 397 1.444444 5.73444268 Acanthaster planci 133434 Echinodermata other_Eukaryota 52.8 0.038   NTclustered gi|1229127568|ref|XM_022225570.1| 133434 g33183 i0 96.774 0.0780856423173804 31 1 8 0 112 142 1023 1053 PREDICTED: Acanthaster planci tRNA methyltransferase 10 homolog A-like (LOC110974158), mRNA blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
22181909 22181909 PRJNA533114_P_NODE_49738_length_334_cov_1.180077_g49486_i0 PRJNA533114 49738 334 1.180077 3.94145718 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 54.7 0.009   NTclustered gi|1752346232|ref|XM_030979122.1| 7668 g49486 i0 100 0.0868263473053892 29 0 9 0 70 98 2019 1991 PREDICTED: Strongylocentrotus purpuratus helicase with zinc finger domain 2-like (LOC105443243), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
22182220 22182220 PRJNA533114_P_NODE_77038_length_276_cov_1.137931_g76786_i0 PRJNA533114 77038 276 1.137931 3.14068956 Patiria miniata 46514 Echinodermata other_Eukaryota 52.8 0.025   NTclustered gi|1944871106|ref|XM_038199763.1| 46514 g76786 i0 100 0.101449275362319 28 0 10 0 170 197 700 727 PREDICTED: Patiria miniata pre-mRNA cleavage complex 2 protein Pcf11-like (LOC119727731), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;