RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA533114" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA533114 · 19 ✖

analysis 1

  • blastn · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
504395 504395 PRJNA533114_P_NODE_100021_length_249_cov_0.875000_g99769_i0 PRJNA533114 100021 249 0.875 2.17875 Polychytrium aggregatum 110093 Fungi Fungi 150 7.77e-32   NTclustered gi|2432165172|ref|XM_053107803.1| 110093 g99769 i0 77.778 1.01204819277108 252 50 100 6 1 249 969 721 Polychytrium aggregatum FAD binding domain-containing protein (BJ171DRAFT_427326), partial mRNA blastn 252 150 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
1117432 1117432 PRJNA533114_P_NODE_21941_length_484_cov_1.683698_g21691_i0 PRJNA533114 21941 484 1.683698 8.14909832 Fungi 4751 Fungi Fungi 183 1.5999999999999996e-41   NTclustered gi|2897839614|gb|CP161932.1| 109871 g21691 i0 83.412 36.1342975206612 211 22 44 7 223 433 1055159 1055356 Batrachochytrium dendrobatidis strain JEL423 chromosome 10 blastn 17489 183 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
3055557 3055557 PRJNA533114_P_NODE_12463_length_640_cov_8.560847_g12222_i0 PRJNA533114 12463 640 8.560847 54.7894208 Polychytrium aggregatum 110093 Fungi Fungi 195 9.99e-45   NTclustered gi|2432162630|ref|XM_053112000.1| 110093 g12222 i0 76.238 20.1078125 404 74 62 16 81 476 134 523 Polychytrium aggregatum ribosomal protein L22/L17 (BJ171DRAFT_515986), mRNA blastn 12869 195 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
3055778 3055778 PRJNA533114_P_NODE_2383_length_1306_cov_2.376318_g2268_i0 PRJNA533114 2383 1306 2.376318 31.03471308 Polychytrium aggregatum 110093 Fungi Fungi 660 0   NTclustered gi|2432130198|ref|XM_053115874.1| 110093 g2268 i0 77.257 77.5742725880551 1152 244 88 16 69 1211 1383 241 Polychytrium aggregatum P-loop containing nucleoside triphosphate hydrolase protein (BJ171DRAFT_7386), mRNA blastn 101312 660 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
4331924 4331924 PRJNA533114_P_NODE_32704_length_401_cov_1.173780_g32452_i0 PRJNA533114 32704 401 1.17378 4.7068578 Polychytrium aggregatum 110093 Fungi Fungi 283 1.25e-71   NTclustered gi|2432131643|ref|XM_053113105.1| 110093 g32452 i0 80.593 61.7481296758105 371 68 92 4 9 377 358 726 Polychytrium aggregatum 40S ribosomal protein S2 (BJ171DRAFT_557656), partial mRNA blastn 24761 283 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
5608325 5608325 PRJNA533114_P_NODE_118985_length_241_cov_1.660714_g118733_i0 PRJNA533114 118985 241 1.660714 4.00232074 Synchytrium microbalum 1806994 Fungi Fungi 137 5.82e-28   NTclustered gi|1759157086|ref|XM_031170266.1| 1806994 g118733 i0 80.447 5.60165975103734 179 35 74 0 27 205 182 4 Synchytrium microbalum uncharacterized protein (SmJEL517_g04338), partial mRNA blastn 1350 137 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
5608606 5608606 PRJNA533114_P_NODE_25025_length_454_cov_2.026247_g24775_i0 PRJNA533114 25025 454 2.026247 9.19916138 Polychytrium aggregatum 110093 Fungi Fungi 259 2.42e-64   NTclustered gi|2432151540|ref|XM_053108788.1| 110093 g24775 i0 82.877 10.3039647577093 292 46 64 4 165 454 626 915 Polychytrium aggregatum uncharacterized protein (BJ171DRAFT_475566), partial mRNA blastn 4678 259 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
10708549 10708549 PRJNA533114_P_NODE_116129_length_242_cov_2.852071_g115877_i0 PRJNA533114 116129 242 2.852071 6.90201182 Polychytrium aggregatum 110093 Fungi Fungi 104 5.93e-18   NTclustered gi|2432155690|ref|XM_053111537.1| 110093 g115877 i0 83.186 0.466942148760331 113 19 47 0 71 183 1344 1232 Polychytrium aggregatum mitochondrial carrier domain-containing protein (BJ171DRAFT_511047), mRNA blastn 113 104 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
10709115 10709115 PRJNA533114_P_NODE_40449_length_365_cov_1.147260_g40197_i0 PRJNA533114 40449 365 1.14726 4.187499 Spizellomyces punctatus 109760 Fungi Fungi 174 7.09e-39   NTclustered gi|1026980085|ref|XM_016752373.1| 645134 g40197 i0 82.5 3.03561643835616 200 34 55 1 13 212 379 181 Spizellomyces punctatus DAOM BR117 40S ribosomal protein S15 (SPPG_04127), mRNA blastn 1108 174 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
10709350 10709350 PRJNA533114_P_NODE_58249_length_311_cov_2.907563_g57997_i0 PRJNA533114 58249 311 2.907563 9.04252093 Polychytrium aggregatum 110093 Fungi Fungi 65.8 3.73e-6   NTclustered gi|2432137562|ref|XM_053107034.1| 110093 g57997 i0 93.182 0.276527331189711 44 3 14 0 22 65 127 170 Polychytrium aggregatum P-loop containing nucleoside triphosphate hydrolase protein (BJ171DRAFT_307242), mRNA blastn 86 65.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
10709608 10709608 PRJNA533114_P_NODE_82789_length_267_cov_1.237113_g82537_i0 PRJNA533114 82789 267 1.237113 3.30309171 Spizellomyces punctatus 109760 Fungi Fungi 62.1 4.06e-5   NTclustered gi|1027018751|ref|XM_016755894.1| 645134 g82537 i0 100 0.123595505617978 33 0 12 0 111 143 192 224 Spizellomyces punctatus DAOM BR117 translation initiation factor aIF-2 (SPPG_07736), mRNA blastn 33 62.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
11983217 11983217 PRJNA533114_P_NODE_111970_length_244_cov_0.900585_g111718_i0 PRJNA533114 111970 244 0.900585 2.1974274 Polychytrium aggregatum 110093 Fungi Fungi 171 5.82e-38   NTclustered gi|2432129870|ref|XM_053107267.1| 110093 g111718 i0 87.333 2.16393442622951 150 17 61 2 83 231 236 384 Polychytrium aggregatum ribosomal protein S7 domain-containing protein (BJ171DRAFT_4084), mRNA blastn 528 171 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
12596569 12596569 PRJNA533114_P_NODE_82030_length_268_cov_1.394872_g81778_i0 PRJNA533114 82030 268 1.394872 3.73825696 Fungi 4751 Fungi Fungi 202 2.3e-47   NTclustered gi|387233032|gb|JN033824.1| 4757 g81778 i0 84.729 81.2910447761194 203 29 75 2 29 230 638 437 Neocallimastix frontalis strain PMA02 glyceraldehyde-3-phosphate dehydrogenase (GAP1) mRNA, partial cds blastn 21786 204 0.990196078431373 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix frontalis
13258631 13258631 PRJNA533114_P_NODE_25191_length_453_cov_1.178947_g24941_i0 PRJNA533114 25191 453 1.178947 5.34062991 Polychytrium aggregatum 110093 Fungi Fungi 60.2 2.62e-4   NTclustered gi|2432146526|ref|XM_053108399.1| 110093 g24941 i0 100 0.328918322295806 32 0 7 0 230 261 470 501 Polychytrium aggregatum uncharacterized protein (BJ171DRAFT_459091), mRNA blastn 149 60.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
15807053 15807053 PRJNA533114_P_NODE_106013_length_246_cov_1.543353_g105761_i0 PRJNA533114 106013 246 1.543353 3.79664838 Neocallimastix patriciarum 4758 Fungi Fungi 130 9.98e-26   NTclustered gi|31790766|gb|AF419853.1| 4758 g105761 i0 87.069 46.1951219512195 116 14 47 1 118 233 238 352 Neocallimastix patriciarum heat shock protein 70 precursor (Hsp70) mRNA, complete cds blastn 11364 130 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix patriciarum
15807995 15807995 PRJNA533114_P_NODE_5973_length_902_cov_10.165259_g5796_i0 PRJNA533114 5973 902 10.165259 91.69063618 Neocallimastix frontalis 4757 Fungi Fungi 137 2.4400000000000003e-27   NTclustered gi|387233028|gb|JN033822.1| 4757 g5796 i0 77.637 3.51219512195122 237 45 26 6 562 794 481 713 Neocallimastix frontalis strain PMA02 triose phosphate isomerase (TPI1) mRNA, complete cds blastn 3168 137 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix frontalis
19631528 19631528 PRJNA533114_P_NODE_73996_length_280_cov_5.106280_g73744_i0 PRJNA533114 73996 280 5.10628 14.297584 Polychytrium aggregatum 110093 Fungi Fungi 121 6.969999999999999e-23   NTclustered gi|2432138713|ref|XM_053107478.1| 110093 g73744 i0 84.252 7.66785714285714 127 16 45 3 148 272 148 24 Polychytrium aggregatum large subunit ribosomal protein 29 (BJ171DRAFT_421272), partial mRNA blastn 2147 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
22182082 22182082 PRJNA533114_P_NODE_6318_length_882_cov_2.077874_g6134_i0 PRJNA533114 6318 882 2.077874 18.32684868 Polychytrium aggregatum 110093 Fungi Fungi 359 4.6799999999999997e-94   NTclustered gi|2432132579|ref|XM_053106383.1| 110093 g6134 i0 80.417 45.9750566893424 480 86 54 8 407 882 1761 1286 Polychytrium aggregatum heat shock protein 70 family (BJ171DRAFT_212372), mRNA blastn 40550 359 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
22182338 22182338 PRJNA533114_P_NODE_87138_length_260_cov_1.631016_g86886_i0 PRJNA533114 87138 260 1.631016 4.2406416 Polychytrium aggregatum 110093 Fungi Fungi 228 3.6699999999999994e-55   NTclustered gi|2432131711|ref|XM_053109357.1| 110093 g86886 i0 84.649 86.8307692307692 228 35 88 0 31 258 568 341 Polychytrium aggregatum calmodulin (BJ171DRAFT_488251), mRNA blastn 22576 228 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;