RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA533114" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA533114 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4331482 4331482 PRJNA533114_P_NODE_11764_length_658_cov_2.969231_g11525_i0 PRJNA533114 11764 658 2.969231 19.53753998 Asterionellopsis glacialis 33640 SAR_Eukaryotes SAR_Eukaryotes 442 3.3299999999999987e-119   NTclustered gi|225685848|dbj|AB461922.1| 33640 g11525 i0 79.084 49.580547112462 655 127 99 10 9 658 788 139 Asterionellopsis glacialis MAT mRNA for methionine S-adenosyl transferase, complete cds blastn 32624 442 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Asterionellopsis Asterionellopsis glacialis
17081947 17081947 PRJNA533114_P_NODE_12414_length_641_cov_14.904930_g12174_i0 PRJNA533114 12414 641 14.90493 95.5406013 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 87.9 1.75e-12   NTclustered gi|224008964|ref|XM_002293405.1| 296543 g12174 i0 78.906 0.296411856474259 128 27 20 0 263 390 323 196 Thalassiosira pseudonana CCMP1335 RL6, ribosomal protein 6 (RL6), partial mRNA blastn 190 87.9 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;