RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA533114" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA533114 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8157286 8157286 PRJNA533114_P_NODE_103367_length_247_cov_1.649425_g103115_i0 PRJNA533114 103367 247 1.649425 4.07407975 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 54.7 0.006   NTclustered gi|2874253677|emb|OY969111.1| 171953 g103115 i0 100 0.117408906882591 29 0 12 0 120 148 179888 179916 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.3 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
8158400 8158400 PRJNA533114_P_NODE_79507_length_272_cov_1.386935_g79255_i0 PRJNA533114 79507 272 1.386935 3.7724632 Occallatibacter riparius 1002689 Bacteria Bacteria 52.8 0.025   NTclustered gi|2304899767|gb|CP093313.1| 1002689 g79255 i0 100 0.102941176470588 28 0 10 0 121 148 6160749 6160722 Occallatibacter riparius strain DSM 25168 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Occallatibacter Occallatibacter riparius
13259062 13259062 PRJNA533114_P_NODE_55751_length_318_cov_0.995918_g55499_i0 PRJNA533114 55751 318 0.995918 3.16701924 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 207 6.01e-49   NTclustered gi|2874253700|emb|OY969426.1| 2651171 g55499 i0 81.783 8.5062893081761 258 37 80 10 46 298 2584776 2585028 MAG: Thermoanaerobaculia bacterium isolate MFD02979.bin.c.1 genome assembly, chromosome: 1 blastn 2705 207 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;