RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA533114" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA533114 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4332153 4332153 PRJNA533114_P_NODE_4_length_7169_cov_82.912909_g3_i0 PRJNA533114 4 7169 82.912909 5944.02644621 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 2948 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g3 i0 96.521 0.671083833170596 1782 58 67 4 5383 7162 5329 7108 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 4811 2948 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
6882201 6882201 PRJNA533114_P_NODE_122246_length_233_cov_2.031250_g121994_i0 PRJNA533114 122246 233 2.03125 4.7328125 Zebrafish influenza B-like virus RQ01 Viruses Viruses 54.7 0.006   NTclustered gi|425786094|gb|CY128441.1| RQ01 g121994 i0 100 0.124463519313305 29 0 12 0 53 81 2268 2296 Influenza A virus (A/Viet Nam/001-1424/2009(H1N1)) PB1 and PB1-F2 genes, complete sequence blastn 29 54.7 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Zebrafish influenza B-like virus
13871455 13871455 PRJNA533114_P_NODE_72831_length_282_cov_1.885167_g72579_i0 PRJNA533114 72831 282 1.885167 5.31617094 Norovirus 142786 Viruses Viruses 52.8 0.026   NTclustered gi|1832705315|gb|MT357898.1| 122928 g72579 i0 100 0.595744680851064 28 0 10 0 2 29 7554 7581 Norovirus GI isolate Hu/US/2017/GI.7[P7]/Pennsylvania1060 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds blastn 168 52.8 1 Viruses Norovirus GI Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae Norovirus Norovirus norwalkense

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;