RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA533114" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 5 ✖

bioproject 1

  • PRJNA533114 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1780830 1780830 PRJNA533114_P_NODE_74202_length_280_cov_1.507246_g73950_i0 PRJNA533114 74202 280 1.507246 4.2202888 Salinirarus marinus 3068310 Archaea Archaea 56.5 0.002   NTclustered gi|2563036160|gb|CP132292.1| 3068310 g73950 i0 96.97 0.117857142857143 33 1 12 0 156 188 930919 930887 Haloferacaceae archaeon XH8 chromosome, complete genome blastn 33 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinirarus Salinirarus marinus
8770616 8770616 PRJNA533114_P_NODE_54367_length_321_cov_1.637097_g54115_i0 PRJNA533114 54367 321 1.637097 5.25508137 Methanomicrobiales 2191 Archaea Archaea 63.9 1.39e-5   NTclustered gi|2006650972|gb|CP036172.1| 126734 g54115 i0 93.023 0.342679127725857 43 3 13 0 257 299 276271 276313 Methanofollis aquaemaris strain N2F9704 chromosome, complete genome blastn 110 63.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis aquaemaris
15145632 15145632 PRJNA533114_P_NODE_44672_length_350_cov_1.111913_g44420_i0 PRJNA533114 44672 350 1.111913 3.8916955 Methanococcus 2184 Archaea Archaea 52.8 0.033   NTclustered gi|1342459100|gb|CP026606.1| 39152 g44420 i0 100 0.548571428571429 28 0 8 0 260 287 1225424 1225397 Methanococcus maripaludis strain DSM 2067 chromosome, complete genome blastn 192 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis
17081845 17081845 PRJNA533114_P_NODE_110454_length_245_cov_0.895349_g110202_i0 PRJNA533114 110454 245 0.895349 2.19360505 Natrinema marinum 2961598 Archaea Archaea 52.8 0.022   NTclustered gi|2273363723|gb|CP100763.1| 2961598 g110202 i0 100 0.114285714285714 28 0 11 0 144 171 736315 736342 Natrinema marinum strain DT87 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema marinum
19631390 19631390 PRJNA533114_P_NODE_6196_length_889_cov_3.919118_g6014_i0 PRJNA533114 6196 889 3.919118 34.84095902 Methanocaldococcus fervens 83171 Archaea Archaea 54.7 0.025   NTclustered gi|256793173|gb|CP001696.1| 573064 g6014 i0 100 0.0326209223847019 29 0 3 0 479 507 1282644 1282616 Methanocaldococcus fervens AG86, complete genome blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus fervens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;