RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA533114" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA533114 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11320603 11320603 PRJNA533114_P_NODE_30069_length_416_cov_2.991254_g29817_i0 PRJNA533114 30069 416 2.991254 12.44361664 Fusobacterium 848 Bacteria Bacteria 52.8 0.04   NTclustered gi|1370537877|gb|CP028108.1| 860 g29817 i0 100 0.538461538461538 28 0 7 0 9 36 1234890 1234863 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 224 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
19631362 19631362 PRJNA533114_P_NODE_59316_length_309_cov_1.305085_g59064_i0 PRJNA533114 59316 309 1.305085 4.03271265 Fusobacteriaceae bacterium 2053555 Bacteria Bacteria 152 2.77e-32   NTclustered gi|2892346784|dbj|AP035781.1| 2053555 g59064 i0 76.727 4.13915857605178 275 62 89 2 1 274 264216 264489 Fusobacteriaceae bacterium 9N8 DNA, complete genome blastn 1279 152 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium
22182184 22182184 PRJNA533114_P_NODE_73558_length_281_cov_1.495192_g73306_i0 PRJNA533114 73558 281 1.495192 4.20148952 Sneathia vaginalis 187101 Bacteria Bacteria 176 1.47e-39   NTclustered gi|808076794|gb|CP011280.1| 187101 g73306 i0 79.608 75.7829181494662 255 45 89 6 30 279 310295 310043 Sneathia vaginalis strain SN35 chromosome, complete genome blastn 21295 176 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;