RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA533114" and tax_clade = "Stenosarchaea group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA533114 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1780830 1780830 PRJNA533114_P_NODE_74202_length_280_cov_1.507246_g73950_i0 PRJNA533114 74202 280 1.507246 4.2202888 Salinirarus marinus 3068310 Archaea Archaea 56.5 0.002   NTclustered gi|2563036160|gb|CP132292.1| 3068310 g73950 i0 96.97 0.117857142857143 33 1 12 0 156 188 930919 930887 Haloferacaceae archaeon XH8 chromosome, complete genome blastn 33 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinirarus Salinirarus marinus
8770616 8770616 PRJNA533114_P_NODE_54367_length_321_cov_1.637097_g54115_i0 PRJNA533114 54367 321 1.637097 5.25508137 Methanomicrobiales 2191 Archaea Archaea 63.9 1.39e-5   NTclustered gi|2006650972|gb|CP036172.1| 126734 g54115 i0 93.023 0.342679127725857 43 3 13 0 257 299 276271 276313 Methanofollis aquaemaris strain N2F9704 chromosome, complete genome blastn 110 63.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis aquaemaris
17081845 17081845 PRJNA533114_P_NODE_110454_length_245_cov_0.895349_g110202_i0 PRJNA533114 110454 245 0.895349 2.19360505 Natrinema marinum 2961598 Archaea Archaea 52.8 0.022   NTclustered gi|2273363723|gb|CP100763.1| 2961598 g110202 i0 100 0.114285714285714 28 0 11 0 144 171 736315 736342 Natrinema marinum strain DT87 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema marinum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;