RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA533114" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA533114 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1780330 1780330 PRJNA533114_P_NODE_34242_length_393_cov_1.190625_g33990_i0 PRJNA533114 34242 393 1.190625 4.67915625 Candidatus Aminicenantes bacterium 2052149 Bacteria Bacteria 52.8 0.038   NTclustered gi|2874253743|emb|OY969586.1| 2052149 g33990 i0 100 0.0712468193384224 28 0 7 0 61 88 506955 506982 MAG: Candidatus Aminicenantes bacterium isolate MFD10007.bin.c.2 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Aminicenantota         Candidatus Aminicenantes bacterium
11983975 11983975 PRJNA533114_P_NODE_50690_length_331_cov_1.565891_g50438_i0 PRJNA533114 50690 331 1.565891 5.18309921 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 54.7 0.009   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g50438 i0 92.105 0.114803625377644 38 3 11 0 21 58 1340314 1340277 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 38 54.7 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
18356904 18356904 PRJNA533114_P_NODE_69635_length_287_cov_2.158879_g69383_i0 PRJNA533114 69635 287 2.158879 6.19598273 Candidatus Campbellbacteria bacterium GW2011_OD1_34_28 1618633 Bacteria Bacteria 58.4 5.7e-4   NTclustered gi|837353685|gb|CP011215.1| 1618633 g69383 i0 100 0.10801393728223 31 0 11 0 237 267 622144 622114 MAG: Candidatus Campbellbacteria bacterium GW2011_OD1_34_28 chromosome, complete genome blastn 31 58.4 1 Bacteria Bacteria candidate phyla   Candidatus Campbelliibacteriota         Candidatus Campbellbacteria bacterium GW2011_OD1_34_28

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;