RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA532380" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

  • Viruses · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA532380 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
503768 503768 PRJNA532380_P_NODE_1_length_10979_cov_1690.222232_g0_i0 PRJNA532380 1 10979 1690.222232 185569.49885128 Spring viraemia of carp virus 696863 Viruses Viruses 20242 0   NTclustered gi|15211934|emb|AJ318079.1| 696863 g0 i0 99.954 30.0786046087986 10978 2 99 2 2 10979 10994 20 Spring Viremia of Carp complete genome, genomic RNA blastn 330233 20242 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
1779363 1779363 PRJNA532380_P_NODE_30462_length_165_cov_1.344828_g30137_i0 PRJNA532380 30462 165 1.344828 2.2189662 Polycipiviridae sp. 2496155 Viruses Viruses 52.8 0.014   NTclustered gi|2756421824|gb|PP744841.1| 2496155 g30137 i0 90.244 0.248484848484848 41 3 24 1 39 78 9171 9211 MAG: Polycipiviridae sp. isolate 086_167342 genomic sequence blastn 41 52.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Polycipiviridae   Polycipiviridae sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;