RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA532380" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA532380 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
503861 503861 PRJNA532380_P_NODE_22901_length_187_cov_2.202899_g22576_i0 PRJNA532380 22901 187 2.202899 4.11942113 Neobenedenia melleni 280695 Platyhelminthes Platyhelminthes 95.3 2.62e-15   NTclustered gi|335353832|emb|FN908505.1| 280695 g22576 i0 98.148 24.8342245989305 54 1 29 0 81 134 1762 1709 Neobenedenia melleni mRNA for heat shock protein 60 (hsp60 gene) blastn 4644 95.3 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Capsalidea Capsalidae Neobenedenia Neobenedenia melleni
18968957 18968957 PRJNA532380_P_NODE_10975_length_278_cov_1.873362_g10650_i0 PRJNA532380 10975 278 1.873362 5.20794636 Platyhelminthes 6157 Platyhelminthes Platyhelminthes 106 1.94e-18   NTclustered gi|28273274|gb|AY157162.1| 66825 g10650 i0 84.545 40.4172661870504 110 14 39 3 162 270 405 298 Provortex psammophilus 28S large subunit ribosomal RNA gene, partial sequence blastn 11236 106 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Provorticidae Provortex Provortex psammophilus
23455662 23455662 PRJNA532380_P_NODE_12759_length_254_cov_2.741463_g12434_i0 PRJNA532380 12759 254 2.741463 6.96331602 Dugesia japonica 6161 Platyhelminthes Platyhelminthes 204 6.02e-48   NTclustered gi|393794643|dbj|AK389067.1| 6161 g12434 i0 83.036 17.7716535433071 224 38 88 0 2 225 266 43 Dugesia japonica cDNA, clone: Dj_aH_000_07236HH.full, full-insert sequence, expressed in adult head blastn 4514 204 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Dugesia Dugesia japonica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;