RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA532380" and tax_phylum = "Nemertea"

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tax_superkingdom 1

tax_phylum 1

  • Nemertea · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA532380 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
503808 503808 PRJNA532380_P_NODE_2141_length_725_cov_24.717456_g1877_i0 PRJNA532380 2141 725 24.717456 179.201556 Lineus longissimus 88925 Nemertea other_Eukaryota 302 6.52e-77   NTclustered gi|2724537038|ref|XM_064784001.1| 88925 g1877 i0 80.879 17.8537931034483 387 70 53 4 237 621 515 131 PREDICTED: Lineus longissimus peptidyl-prolyl cis-trans isomerase-like (LOC135495403), mRNA blastn 12944 302 1 Eukaryota Opisthokonta Metazoa Nemertea Pilidiophora Heteronemertea Lineidae Lineus Lineus longissimus
13257195 13257195 PRJNA532380_P_NODE_10951_length_278_cov_15.524017_g10626_i0 PRJNA532380 10951 278 15.524017 43.15676726 Cerebratulus lacteus 6221 Nemertea other_Eukaryota 150 8.82e-32   NTclustered gi|584614313|gb|KF887961.1| 6221 g10626 i0 80.198 3.11870503597122 202 38 72 2 57 257 207 7 Cerebratulus lacteus ribosomal protein S28 mRNA, partial cds blastn 867 150 1 Eukaryota Opisthokonta Metazoa Nemertea Pilidiophora Heteronemertea Lineidae Cerebratulus Cerebratulus lacteus
24729987 24729987 PRJNA532380_P_NODE_30580_length_165_cov_0.896552_g30255_i0 PRJNA532380 30580 165 0.896552 1.4793108 Lineus longissimus 88925 Nemertea other_Eukaryota 113 6.240000000000001e-21   NTclustered gi|2724533664|ref|XM_064767890.1| 88925 g30255 i0 79.394 4 165 30 99 4 1 163 1581 1419 PREDICTED: Lineus longissimus glutamate dehydrogenase, mitochondrial-like (LOC135485633), transcript variant X2, mRNA blastn 660 113 1 Eukaryota Opisthokonta Metazoa Nemertea Pilidiophora Heteronemertea Lineidae Lineus Lineus longissimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;