RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA532380" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA532380 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4330768 4330768 PRJNA532380_P_NODE_22644_length_188_cov_3.410072_g22319_i0 PRJNA532380 22644 188 3.410072 6.41093536 Pseudoloma neurophilia 146866 Fungi Fungi 348 1.84e-91   NTclustered gi|11993647|gb|AF322654.1| 146866 g22319 i0 100 100.207446808511 188 0 100 0 1 188 1516 1703 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18839 348 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
11982898 11982898 PRJNA532380_P_NODE_410_length_1504_cov_4.171134_g340_i0 PRJNA532380 410 1504 4.171134 62.73385536 Pleistophora mulleri 249366 Fungi Fungi 1476 0   NTclustered gi|134147422|gb|EF119339.1| 249366 g340 i0 85.253 24.7360372340426 1485 157 96 54 1 1444 3089 1626 Pleistophora mulleri 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 37203 1476 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Pleistophora Pleistophora mulleri
14533094 14533094 PRJNA532380_P_NODE_592_length_1309_cov_5.046825_g488_i0 PRJNA532380 592 1309 5.046825 66.06293925 Pseudoloma neurophilia 146866 Fungi Fungi 2410 0   NTclustered gi|11993647|gb|AF322654.1| 146866 g488 i0 99.847 91.9060351413293 1309 2 100 0 1 1309 1319 11 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 120305 2410 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;