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contig_metadata

33 rows where analysis = "blastn", bioproject = "PRJNA532380" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 33 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA532380 · 33 ✖

analysis 1

  • blastn · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
504029 504029 PRJNA532380_P_NODE_28741_length_168_cov_0.865546_g28416_i0 PRJNA532380 28741 168 0.865546 1.45411728 Varanus komodoensis 61221 Chordata Chordata 143 8.139999999999998e-30   NTclustered gi|2118041141|ref|XM_044418908.1| 61221 g28416 i0 83.019 7.84523809523809 159 25 94 2 1 158 1290 1447 PREDICTED: Varanus komodoensis RNA polymerase II subunit B (POLR2B), mRNA blastn 1318 143 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
504088 504088 PRJNA532380_P_NODE_31161_length_164_cov_2.530435_g30836_i0 PRJNA532380 31161 164 2.530435 4.1499134 Erpetoichthys calabaricus 27687 Chordata Chordata 180 6.02e-41   NTclustered gi|2327564416|ref|XM_028817223.2| 27687 g30836 i0 88.514 5.45731707317073 148 17 90 0 13 160 70 217 PREDICTED: Erpetoichthys calabaricus proteasome 20S subunit alpha 2b (psma2b), mRNA blastn 895 180 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
1117350 1117350 PRJNA532380_P_NODE_25561_length_176_cov_1.094488_g25236_i0 PRJNA532380 25561 176 1.094488 1.92629888 Chordata 7711 Chordata Chordata 62.1 2.47e-5   NTclustered gi|1820982948|ref|XM_032901530.1| 10117 g25236 i0 100 20.0568181818182 33 0 19 0 93 125 909 941 PREDICTED: Rattus rattus nucleolin (Ncl), mRNA blastn 3530 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus rattus
1117358 1117358 PRJNA532380_P_NODE_28361_length_168_cov_0.873950_g28036_i0 PRJNA532380 28361 168 0.87395 1.468236 Chondrichthyes 7777 Chordata Chordata 143 8.139999999999998e-30   NTclustered gi|1952577514|ref|XM_038811602.1| 7830 g28036 i0 84.615 25.1666666666667 143 22 85 0 21 163 1767 1909 PREDICTED: Scyliorhinus canicula SRSF protein kinase 2 (srpk2), transcript variant X1, mRNA blastn 4228 143 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
1778826 1778826 PRJNA532380_P_NODE_13302_length_249_cov_1.040000_g12977_i0 PRJNA532380 13302 249 1.04 2.5896 Anolis carolinensis 28377 Chordata Chordata 52.8 0.023   NTclustered gi|2672824203|ref|XM_062978777.1| 28377 g12977 i0 100 0.562248995983936 28 0 11 0 142 169 929 956 PREDICTED: Anolis carolinensis chromodomain helicase DNA binding protein 6 (chd6), transcript variant X5, mRNA blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis carolinensis
1778953 1778953 PRJNA532380_P_NODE_16962_length_218_cov_2.923077_g16637_i0 PRJNA532380 16962 218 2.923077 6.37230786 Tiliqua scincoides 71010 Chordata Chordata 108 4.06e-19   NTclustered gi|2775393109|ref|XM_066609931.1| 71010 g16637 i0 84.906 9.62844036697248 106 16 49 0 1 106 222 117 PREDICTED: Tiliqua scincoides small nuclear ribonucleoprotein D3 polypeptide (SNRPD3), mRNA blastn 2099 108 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Scincidae Tiliqua Tiliqua scincoides
1779461 1779461 PRJNA532380_P_NODE_33722_length_159_cov_2.836364_g33397_i0 PRJNA532380 33722 159 2.836364 4.50981876 Xenopus laevis 8355 Chordata Chordata 73.1 1.01e-8   NTclustered gi|284447270|ref|NM_001171698.1| 8355 g33397 i0 82.353 0.534591194968553 85 13 53 2 67 150 108 191 Xenopus laevis meiosis/spermiogenesis associated 1 S homeolog (meig1.S), mRNA blastn 85 73.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
3054965 3054965 PRJNA532380_P_NODE_27443_length_169_cov_0.866667_g27118_i0 PRJNA532380 27443 169 0.866667 1.46466723 Branchiostoma floridae 7739 Chordata Chordata 141 2.93e-29   NTclustered gi|1889973392|ref|XM_035821978.1| 7739 g27118 i0 81.657 4.01183431952663 169 31 100 0 1 169 419 251 PREDICTED: Branchiostoma floridae pre-mRNA-splicing factor ISY1 homolog (LOC118416748), mRNA blastn 678 141 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
3668775 3668775 PRJNA532380_P_NODE_31223_length_164_cov_1.686957_g30898_i0 PRJNA532380 31223 164 1.686957 2.76660948 Hemiscylliidae 40580 Chordata Chordata 148 1.6999999999999996e-31   NTclustered gi|2096738131|ref|XM_043718514.1| 36176 g30898 i0 82.927 3 164 28 100 0 1 164 6838 7001 PREDICTED: Chiloscyllium plagiosum pre-mRNA processing factor 8 (prpf8), transcript variant X2, mRNA blastn 492 148 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium plagiosum
4330746 4330746 PRJNA532380_P_NODE_22004_length_191_cov_1.464789_g21679_i0 PRJNA532380 22004 191 1.464789 2.79774699 Tauraco erythrolophus 121530 Chordata Chordata 185 1.5499999999999998e-42   NTclustered gi|701337516|ref|XM_009982632.1| 121530 g21679 i0 84.211 27.6544502617801 190 30 99 0 1 190 26 215 PREDICTED: Tauraco erythrolophus thioredoxin-like 4A (TXNL4A), partial mRNA blastn 5282 185 1 Eukaryota Opisthokonta Metazoa Chordata Aves Musophagiformes Musophagidae Tauraco Tauraco erythrolophus
4945614 4945614 PRJNA532380_P_NODE_15924_length_226_cov_1.553672_g15599_i0 PRJNA532380 15924 226 1.553672 3.51129872 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 169 1.91e-37   NTclustered gi|1121805623|ref|XM_019551258.1| 8502 g15599 i0 88.971 32.3362831858407 136 15 60 0 91 226 343 208 PREDICTED: Crocodylus porosus RNA polymerase II subunit K (POLR2K), transcript variant X2, mRNA blastn 7308 169 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Crocodylidae Crocodylus Crocodylus porosus
5607558 5607558 PRJNA532380_P_NODE_20765_length_197_cov_1.405405_g20440_i0 PRJNA532380 20765 197 1.405405 2.76864785 Dromiciops gliroides 33562 Chordata Chordata 128 2.76e-25   NTclustered gi|2102654069|ref|XM_043982423.1| 33562 g20440 i0 84.091 57.2284263959391 132 21 67 0 11 142 697 828 PREDICTED: Dromiciops gliroides metastasis associated 1 (MTA1), mRNA blastn 11274 128 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Microbiotheria Microbiotheriidae Dromiciops Dromiciops gliroides
5608096 5608096 PRJNA532380_P_NODE_8645_length_321_cov_1.062500_g8320_i0 PRJNA532380 8645 321 1.0625 3.410625 Mus musculus 10090 Chordata Chordata 56.5 0.002   NTclustered gi|53382945|gb|AC139108.3| 10090 g8320 i0 100 0.0934579439252336 30 0 9 0 58 87 118584 118613 Mus musculus BAC clone RP23-93M1 from 9, complete sequence blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
7495573 7495573 PRJNA532380_P_NODE_27146_length_169_cov_1.733333_g26821_i0 PRJNA532380 27146 169 1.733333 2.92933277 Metazoa 33208 Chordata Chordata 54.7 0.004   NTclustered gi|40789202|emb|AL606494.4| 10090 g26821 i0 100 1.02366863905325 29 0 17 0 2 30 60782 60810 Mouse DNA sequence from clone RP23-198B6 on chromosome 2 Contains the 5' end of the Prrg4 gene for proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane), a novel gene, a SUB1 homolog (S. cerevisia) (Sub1) pseudogene, the Ga17 gene for dendritic cell protein GA17, an NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1) pseudogene and two CpG islands, complete sequence blastn 173 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
10707818 10707818 PRJNA532380_P_NODE_22529_length_189_cov_1.407143_g22204_i0 PRJNA532380 22529 189 1.407143 2.65950027 Dendropsophus ebraccatus 150705 Chordata Chordata 89.8 1.24e-13   NTclustered gi|2853430612|ref|XM_069970089.1| 150705 g22204 i0 85.882 2.66137566137566 85 11 45 1 105 189 1508 1425 PREDICTED: Dendropsophus ebraccatus tubulin alpha 1b (TUBA1B), mRNA blastn 503 89.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Dendropsophus Dendropsophus ebraccatus
10707836 10707836 PRJNA532380_P_NODE_23009_length_187_cov_1.355072_g22684_i0 PRJNA532380 23009 187 1.355072 2.53398464 Gymnogyps californianus 33616 Chordata Chordata 154 4.27e-33   NTclustered gi|2312032020|ref|XM_050904348.1| 33616 g22684 i0 83.537 88.1818181818182 164 27 88 0 4 167 7085 6922 PREDICTED: Gymnogyps californianus CCR4-NOT transcription complex subunit 1 (CNOT1), transcript variant X11, mRNA blastn 16490 154 1 Eukaryota Opisthokonta Metazoa Chordata Aves Accipitriformes Cathartidae Gymnogyps Gymnogyps californianus
11982522 11982522 PRJNA532380_P_NODE_21510_length_193_cov_2.055556_g21185_i0 PRJNA532380 21510 193 2.055556 3.96722308 Mus pahari 10093 Chordata Chordata 110 9.73e-20   NTclustered gi|1195511196|ref|XM_021212643.1| 10093 g21185 i0 84.071 53.2072538860104 113 18 59 0 73 185 115 227 PREDICTED: Mus pahari S-phase kinase associated protein 1 (Skp1), mRNA blastn 10269 110 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus pahari
11982660 11982660 PRJNA532380_P_NODE_26430_length_172_cov_1.691057_g26105_i0 PRJNA532380 26430 172 1.691057 2.90861804 Microcaecilia unicolor 1415580 Chordata Chordata 104 3.93e-18   NTclustered gi|1717018629|ref|XM_030205456.1| 1415580 g26105 i0 80.597 0.779069767441861 134 26 78 0 39 172 346 479 PREDICTED: Microcaecilia unicolor ras homolog family member A (RHOA), mRNA blastn 134 104 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Siphonopidae Microcaecilia Microcaecilia unicolor
13257791 13257791 PRJNA532380_P_NODE_28671_length_168_cov_0.873950_g28346_i0 PRJNA532380 28671 168 0.87395 1.468236 Pantherophis guttatus 94885 Chordata Chordata 52.8 0.014   NTclustered gi|2616713474|ref|XM_034410245.2| 94885 g28346 i0 100 0.333333333333333 28 0 17 0 78 105 4021 3994 PREDICTED: Pantherophis guttatus abhydrolase domain containing 17B, depalmitoylase (ABHD17B), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Colubridae Pantherophis Pantherophis guttatus
13257948 13257948 PRJNA532380_P_NODE_33911_length_154_cov_9.933333_g33586_i0 PRJNA532380 33911 154 9.933333 15.29733282 Rhinatrema bivittatum 194408 Chordata Chordata 95.3 2.07e-15   NTclustered gi|1694592779|ref|XM_029616629.1| 194408 g33586 i0 80.992 2.48051948051948 121 22 79 1 30 150 206 325 PREDICTED: Rhinatrema bivittatum COP9 signalosome subunit 9 (COPS9), transcript variant X1, mRNA blastn 382 95.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Rhinatrematidae Rhinatrema Rhinatrema bivittatum
15806169 15806169 PRJNA532380_P_NODE_13273_length_249_cov_1.535000_g12948_i0 PRJNA532380 13273 249 1.535 3.82215 Lampetra planeri 7750 Chordata Chordata 63.9 1.04e-5   NTclustered gi|2805750736|emb|OZ078564.1| 7750 g12948 i0 97.297 0.285140562248996 37 1 15 0 112 148 1387892 1387928 Lampetra planeri genome assembly, chromosome: 79 blastn 71 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
15806399 15806399 PRJNA532380_P_NODE_20493_length_198_cov_2.442953_g20168_i0 PRJNA532380 20493 198 2.442953 4.83704694 Mobula hypostoma 723540 Chordata Chordata 156 1.27e-33   NTclustered gi|2676098910|ref|XM_063056824.1| 723540 g20168 i0 80.808 3.50505050505051 198 38 100 0 1 198 1117 920 PREDICTED: Mobula hypostoma V-type proton ATPase subunit B, brain isoform (LOC134350952), mRNA blastn 694 156 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Myliobatidae Mobula Mobula hypostoma
15806708 15806708 PRJNA532380_P_NODE_31113_length_165_cov_0.896552_g30788_i0 PRJNA532380 31113 165 0.896552 1.4793108 Mus musculus 10090 Chordata Chordata 300 4.46e-77   NTclustered gi|354783391|gb|JN947892.1| 10090 g30788 i0 99.398 4.02424242424242 166 0 100 1 1 165 5450 5615 Mus musculus targeted non-conditional, lacZ-tagged mutant allele Trappc9:tm1e(EUCOMM)Wtsi; transgenic blastn 664 300 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
15806911 15806911 PRJNA532380_P_NODE_7153_length_359_cov_2.922581_g6828_i0 PRJNA532380 7153 359 2.922581 10.49206579 Protobothrops mucrosquamatus 103944 Chordata Chordata 226 1.8899999999999998e-54   NTclustered gi|1663452963|ref|XM_015812801.2| 103944 g6828 i0 87.374 37.8941504178273 198 23 55 2 86 282 135 331 PREDICTED: Protobothrops mucrosquamatus SEC61 translocon gamma subunit (SEC61G), mRNA blastn 13604 226 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Protobothrops Protobothrops mucrosquamatus
17080785 17080785 PRJNA532380_P_NODE_11334_length_273_cov_1.625000_g11009_i0 PRJNA532380 11334 273 1.625 4.43625 Miniopterus natalensis 291302 Chordata Chordata 202 2.3499999999999996e-47   NTclustered gi|1016641376|ref|XM_016224482.1| 291302 g11009 i0 87.791 26.6923076923077 172 21 63 0 14 185 393 222 PREDICTED: Miniopterus natalensis BRX1, biogenesis of ribosomes (BRIX1), mRNA blastn 7287 202 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Miniopteridae Miniopterus Miniopterus natalensis
17081017 17081017 PRJNA532380_P_NODE_18494_length_209_cov_2.312500_g18169_i0 PRJNA532380 18494 209 2.3125 4.833125 Mirounga angustirostris 9716 Chordata Chordata 54.7 0.005   NTclustered gi|2721803765|ref|XM_064575989.1| 9716 g18169 i0 100 0.138755980861244 29 0 14 0 105 133 1056 1028 PREDICTED: Mirounga angustirostris transcription factor BTF3-like (LOC123834376), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Mirounga Mirounga angustirostris
20243936 20243936 PRJNA532380_P_NODE_29016_length_167_cov_0.881356_g28691_i0 PRJNA532380 29016 167 0.881356 1.47186452 Passeridae 9158 Chordata Chordata 111 2.28e-20   NTclustered gi|2032774941|ref|XM_041483748.1| 221976 g28691 i0 83.471 2.13173652694611 121 18 72 2 15 134 1555 1674 PREDICTED: Pyrgilauda ruficollis SEC61 translocon subunit alpha 2 (SEC61A2), mRNA blastn 356 111 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Passeridae Pyrgilauda Pyrgilauda ruficollis
20905895 20905895 PRJNA532380_P_NODE_21797_length_192_cov_1.454545_g21472_i0 PRJNA532380 21797 192 1.454545 2.7927264 Microcaecilia unicolor 1415580 Chordata Chordata 97.1 7.53e-16   NTclustered gi|1717006653|ref|XM_030202142.1| 1415580 g21472 i0 91.429 2.890625 70 6 36 0 5 74 358 427 PREDICTED: Microcaecilia unicolor cytochrome c (LOC115469458), transcript variant X2, mRNA blastn 555 97.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Siphonopidae Microcaecilia Microcaecilia unicolor
20906214 20906214 PRJNA532380_P_NODE_33097_length_162_cov_0.920354_g32772_i0 PRJNA532380 33097 162 0.920354 1.49097348 Mus caroli 10089 Chordata Chordata 106 1.02e-18   NTclustered gi|1195698987|ref|XM_021150290.1| 10089 g32772 i0 79.221 25.962962962963 154 30 94 2 1 153 1321 1473 PREDICTED: Mus caroli carnosine dipeptidase 2 (Cndp2), transcript variant X1, mRNA blastn 4206 106 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus caroli
20906263 20906263 PRJNA532380_P_NODE_4277_length_491_cov_3.975113_g3953_i0 PRJNA532380 4277 491 3.975113 19.51780483 Pseudophryne corroboree 495146 Chordata Chordata 87.9 1.31e-12   NTclustered gi|2703727943|ref|XM_063953513.1| 495146 g3953 i0 79.104 0.272912423625255 134 23 27 5 43 173 110 241 PREDICTED: Pseudophryne corroboree thymosin beta 4 X-linked (TMSB4X), mRNA blastn 134 87.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Myobatrachidae Pseudophryne Pseudophryne corroboree
22794657 22794657 PRJNA532380_P_NODE_23378_length_185_cov_1.742647_g23053_i0 PRJNA532380 23378 185 1.742647 3.22389695 Sciuridae 55153 Chordata Chordata 159 9.049999999999999e-35   NTclustered gi|1474830422|ref|XM_026389945.1| 9999 g23053 i0 83.832 85.7675675675676 167 27 90 0 3 169 704 870 PREDICTED: Urocitellus parryii PBX homeobox 4 (Pbx4), mRNA blastn 15867 159 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Urocitellus Urocitellus parryii
24729965 24729965 PRJNA532380_P_NODE_29880_length_166_cov_0.888889_g29555_i0 PRJNA532380 29880 166 0.888889 1.47555574 Crocodylus porosus 8502 Chordata Chordata 139 1.04e-28   NTclustered gi|1121824717|ref|XM_019532564.1| 8502 g29555 i0 81.818 5.86746987951807 165 30 99 0 1 165 420 584 PREDICTED: Crocodylus porosus tubulin alpha-3 chain (LOC109308321), mRNA blastn 974 139 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Crocodylidae Crocodylus Crocodylus porosus
24730009 24730009 PRJNA532380_P_NODE_31400_length_164_cov_0.904348_g31075_i0 PRJNA532380 31400 164 0.904348 1.48313072 Rana temporaria 8407 Chordata Chordata 54.7 0.004   NTclustered gi|2017856150|ref|XM_040343750.1| 8407 g31075 i0 100 0.176829268292683 29 0 18 0 17 45 529 557 PREDICTED: Rana temporaria potassium voltage-gated channel subfamily D member 2-like (LOC120931857), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;