RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA532380" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA532380 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11320498 11320498 PRJNA532380_P_NODE_16029_length_225_cov_2.215909_g15704_i0 PRJNA532380 16029 225 2.215909 4.98579525 Cetobacterium 180162 Bacteria Bacteria 416 6.159999999999998e-112   NTclustered gi|2865368125|gb|CP122294.1| 188913 g15704 i0 100 536.453333333333 225 0 100 0 1 225 280546 280770 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 120702 416 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
13871341 13871341 PRJNA532380_P_NODE_33331_length_162_cov_0.920354_g33006_i0 PRJNA532380 33331 162 0.920354 1.49097348 Leptotrichia 32067 Bacteria Bacteria 300 4.36e-77   NTclustered gi|470484715|ref|NR_076664.1| 40542 g33006 i0 100 409.197530864198 162 0 100 0 1 162 485 646 Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence blastn 66290 300 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
24729816 24729816 PRJNA532380_P_NODE_24180_length_182_cov_1.097744_g23855_i0 PRJNA532380 24180 182 1.097744 1.99789408 Cetobacterium somerae 188913 Bacteria Bacteria 309 8.32e-80   NTclustered gi|2865366169|gb|CP122292.1| 188913 g23855 i0 97.253 365.098901098901 182 5 100 0 1 182 420092 420273 Cetobacterium somerae strain MSU41 chromosome, complete genome blastn 66448 309 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
25343834 25343834 PRJNA532380_P_NODE_25360_length_177_cov_1.007812_g25035_i0 PRJNA532380 25360 177 1.007812 1.78382724 Cetobacterium 180162 Bacteria Bacteria 322 1.03e-83   NTclustered gi|2865368125|gb|CP122294.1| 188913 g25035 i0 99.435 515.790960451977 177 1 100 0 1 177 279189 279013 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 91295 322 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;