RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA529924" and tax_phylum = "Chaetognatha"

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tax_superkingdom 1

tax_phylum 1

  • Chaetognatha · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA529924 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24729214 24729214 PRJNA529924_P_NODE_2060_length_348_cov_2.448276_g1886_i0 PRJNA529924 2060 348 2.448276 8.52000048 Spadella cephaloptera 52888 Chaetognatha other_Eukaryota 178 5.2099999999999986e-40   NTclustered gi|157690683|tpe|BN001031.1| 52888 g1886 i0 80.328 4.42528735632184 244 40 69 6 8 247 233 472 TPA_inf: Spadella cephaloptera mRNA for putative 60S ribosomal protein L23 (rpl23 gene) blastn 1540 178 1 Eukaryota Opisthokonta Metazoa Chaetognatha Sagittoidea Phragmophora Spadellidae Spadella Spadella cephaloptera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;