RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA529924" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA529924 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11320327 11320327 PRJNA529924_P_NODE_1769_length_398_cov_2.289973_g1595_i0 PRJNA529924 1769 398 2.289973 9.11409254 Chryseobacterium 59732 Bacteria Bacteria 372 2.58e-98   NTclustered gi|1519580736|gb|CP033930.1| 253 g1595 i0 90.592 471.133165829146 287 15 93 4 111 395 2943843 2943567 Chryseobacterium indologenes strain H5559 chromosome, complete genome blastn 187511 375 0.992 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium indologenes
22179933 22179933 PRJNA529924_P_NODE_3658_length_208_cov_2.268156_g3484_i0 PRJNA529924 3658 208 2.268156 4.71776448 Riemerella anatipestifer 34085 Bacteria Bacteria 285 1.6499999999999998e-72   NTclustered gi|2258101473|gb|CP073239.1| 34085 g3484 i0 90.749 297.855769230769 227 2 100 1 1 208 557447 557673 Riemerella anatipestifer strain RCAD0416 chromosome, complete genome blastn 61954 285 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Riemerella Riemerella anatipestifer

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;