RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA529241" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA529241 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24724227 24724227 PRJNA529241_P_NODE_115000_length_206_cov_2.940828_g112678_i0 PRJNA529241 115000 206 2.940828 6.05810568 Fretibacterium fastidiosum 651822 Bacteria Bacteria 291 3.5099999999999993e-74   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g112678 i0 92.271 167.325242718447 207 13 100 3 1 206 68679 68883 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 34469 291 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;