RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA529241" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA529241 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9430190 9430190 PRJNA529241_P_NODE_546528_length_151_cov_3.000000_g544206_i0 PRJNA529241 546528 151 3 4.53 Dysidea avara 196820 Porifera other_Eukaryota 69.4 1.22e-7   NTclustered gi|2749529288|ref|XM_066033442.1| 196820 g544206 i0 95.349 1.13907284768212 43 2 28 0 92 134 775 733 PREDICTED: Dysidea avara extracellular signal-regulated kinase 2-like (LOC136242065), transcript variant X1, mRNA blastn 172 69.4 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Dysideidae Dysidea Dysidea avara
10704418 10704418 PRJNA529241_P_NODE_375129_length_173_cov_2.625000_g372807_i0 PRJNA529241 375129 173 2.625 4.54125 Amphimedon queenslandica 400682 Porifera other_Eukaryota 52.8 0.015   NTclustered gi|1133448667|ref|XM_019996076.1| 400682 g372807 i0 100 0.323699421965318 28 0 32 0 146 173 3114 3141 PREDICTED: Amphimedon queenslandica death-associated protein kinase 1-like (LOC109581719), mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica
15804692 15804692 PRJNA529241_P_NODE_561793_length_150_cov_6.088496_g559471_i0 PRJNA529241 561793 150 6.088496 9.132744 Amphimedon queenslandica 400682 Porifera other_Eukaryota 56.5 0.001   NTclustered gi|1133455200|ref|XM_003384647.3| 400682 g559471 i0 100 0.2 30 0 20 0 96 125 554 583 PREDICTED: Amphimedon queenslandica uncharacterized LOC100636946 (LOC100636946), mRNA blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;