RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA529241" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA529241 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3053508 3053508 PRJNA529241_P_NODE_7783_length_1090_cov_2.707502_g6555_i0 PRJNA529241 7783 1090 2.707502 29.511771800000002 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 99 1.4e-15   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g6555 i0 77.348 7.75779816513761 181 32 16 5 1 173 33371 33192 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 8456 99 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
10704886 10704886 PRJNA529241_P_NODE_427589_length_165_cov_2.429688_g425267_i0 PRJNA529241 427589 165 2.429688 4.0089852 Endostelium crystalliferum 1485074 Discosea other_Eukaryota 305 9.59e-79   NTclustered gi|608606227|gb|KF705034.1| 1485074 g425267 i0 100 1 165 0 100 0 1 165 630 794 Endostelium crystalliferum 18S ribosomal RNA gene, partial sequence blastn 165 305 1 Eukaryota Amoebozoa   Discosea Flabellinia     Endostelium Endostelium crystalliferum
14527244 14527244 PRJNA529241_P_NODE_123972_length_200_cov_1.595092_g121650_i0 PRJNA529241 123972 200 1.595092 3.190184 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.005   NTclustered gi|470512462|ref|XM_004352440.1| 1257118 g121650 i0 100 0.145 29 0 15 0 151 179 714 686 Acanthamoeba castellanii str. Neff 3' exoribonuclease family, domain 1 domain containing protein (ACA1_360300), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;