RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA529241" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA529241 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4327601 4327601 PRJNA529241_P_NODE_41324_length_317_cov_3.492857_g39004_i0 PRJNA529241 41324 317 3.492857 11.07235669 Guinardia delicatula 1244696 SAR_Eukaryotes SAR_Eukaryotes 62.1 4.93e-5   NTclustered gi|2074156200|gb|MW413905.1| 216802 g39004 i0 91.304 0.236593059936909 46 2 15 1 162 207 23922 23965 Guinardia delicatula mitochondrion, complete genome blastn 75 62.1 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Guinardia Guinardia delicatula
12594860 12594860 PRJNA529241_P_NODE_40130_length_322_cov_2.189474_g37810_i0 PRJNA529241 40130 322 2.189474 7.05010628 Guinardia 216800 SAR_Eukaryotes SAR_Eukaryotes 67.6 1.08e-6   NTclustered gi|2202538978|gb|OM891884.1| 216802 g37810 i0 100 10.7826086956522 36 0 11 0 272 307 4125 4090 Guinardia delicatula small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3472 67.6 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Guinardia Guinardia delicatula
23451814 23451814 PRJNA529241_P_NODE_256379_length_173_cov_4.294118_g254057_i0 PRJNA529241 256379 173 4.294118 7.42882414 Nitzschia sp. IriIs04 1444690 SAR_Eukaryotes SAR_Eukaryotes 63.9 6.71e-6   NTclustered gi|944186130|dbj|LC052652.1| 1444690 g254057 i0 97.368 4.54913294797688 38 0 21 1 112 148 121 84 Nitzschia sp. IriIs04 hUbc mRNA for host ubiquitin conjugating E2, complete cds blastn 787 63.9 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia sp. IriIs04

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;