RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA529241" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA529241 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13255166 13255166 PRJNA529241_P_NODE_468831_length_152_cov_1.243478_g466509_i0 PRJNA529241 468831 152 1.243478 1.89008656 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 189 9.08e-44   NTclustered gi|2076449834|gb|CP075365.1| 2682144 g466509 i0 89.404 137.414473684211 151 15 99 1 2 152 1878923 1879072 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM2 chromosome blastn 20887 189 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
18350847 18350847 PRJNA529241_P_NODE_225635_length_173_cov_5.117647_g223313_i0 PRJNA529241 225635 173 5.117647 8.85352931 Armatimonadota bacterium 2033014 Bacteria Bacteria 52.8 0.015   NTclustered gi|2108374973|gb|CP070648.1| 2033014 g223313 i0 100 0.161849710982659 28 0 16 0 130 157 4706665 4706638 MAG: Armatimonadetes bacterium isolate bin88 chromosome blastn 28 52.8 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
22177314 22177314 PRJNA529241_P_NODE_397318_length_173_cov_1.058824_g394996_i0 PRJNA529241 397318 173 1.058824 1.83176552 Armatimonadota bacterium 2033014 Bacteria Bacteria 222 1.05e-53   NTclustered gi|2621703062|emb|OY760504.1| 2033014 g394996 i0 90.533 419.115606936416 169 14 97 2 6 173 2411145 2410978 MAG: Armatimonadota bacterium isolate be0b92b7-bbec-405b-9e81-a5dbe9f1ff7a genome assembly, chromosome: 1 blastn 72507 222 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;