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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA529241" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 16 ✖

bioproject 1

  • PRJNA529241 · 16 ✖

analysis 1

  • blastn · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
499548 499548 PRJNA529241_P_NODE_25201_length_418_cov_5.566929_g22910_i0 PRJNA529241 25201 418 5.566929 23.26976322 Jenufa minuta 993092 Plants Plants 634 3.14e-177   NTclustered gi|959124355|ref|NC_028582.1| 993092 g22910 i0 94.076 218.698564593301 422 18 100 5 1 418 103421 103003 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 91416 634 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
1773369 1773369 PRJNA529241_P_NODE_113942_length_207_cov_1.100000_g111620_i0 PRJNA529241 113942 207 1.1 2.277 Prasiola crispa 173492 Plants Plants 333 5.779999999999999e-87   NTclustered gi|806639636|gb|KR017749.1| 173492 g111620 i0 95.673 131.275362318841 208 7 100 2 1 207 3106 2900 Prasiola crispa clone Contig2 chloroplast sequence blastn 27174 333 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Prasiola Prasiola crispa
1773878 1773878 PRJNA529241_P_NODE_151562_length_185_cov_1.844595_g149240_i0 PRJNA529241 151562 185 1.844595 3.41250075 Jenufa minuta 993092 Plants Plants 342 8.369999999999999e-90   NTclustered gi|959124355|ref|NC_028582.1| 993092 g149240 i0 100 9.37837837837838 185 0 100 0 1 185 104694 104878 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 1735 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
3052179 3052179 PRJNA529241_P_NODE_451463_length_156_cov_1.638655_g449141_i0 PRJNA529241 451463 156 1.638655 2.5563018 Chlorella endosymbiont of Stentor polymorphus 2219871 Plants Plants 237 3.31e-58   NTclustered gi|1401669229|gb|MH295835.1| 2219871 g449141 i0 94.231 100.096153846154 156 8 100 1 1 156 1362 1208 Chlorella endosymbiont of Stentor polymorphus 28S ribosomal RNA gene, partial sequence blastn 15615 237 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella endosymbiont of Stentor polymorphus
4944414 4944414 PRJNA529241_P_NODE_49024_length_292_cov_1.686275_g46702_i0 PRJNA529241 49024 292 1.686275 4.923923 Watanabeales 2981622 Plants Plants 401 2.3299999999999993e-107   NTclustered gi|2663407540|emb|OY754499.1| 1274662 g46702 i0 91.497 149.544520547945 294 22 100 3 1 292 158144 157852 Coccomyxa viridis genome assembly, organelle: plastid blastn 43667 401 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
6219998 6219998 PRJNA529241_P_NODE_54345_length_279_cov_3.252066_g52023_i0 PRJNA529241 54345 279 3.252066 9.07326414 Trebouxiophyceae 75966 Plants Plants 508 1.27e-139   NTclustered gi|328349687|emb|FN298931.1| 3075 g52023 i0 99.64 98.8745519713262 278 1 99 0 1 278 10 287 Auxenochlorella protothecoides 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene (partial), strain CCAP 211/7A blastn 27586 508 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
8154186 8154186 PRJNA529241_P_NODE_457187_length_154_cov_2.717949_g454865_i0 PRJNA529241 457187 154 2.717949 4.18564146 Chlorella variabilis 554065 Plants Plants 54.7 0.004   NTclustered gi|552816487|ref|XM_005844636.1| 554065 g454865 i0 84.746 0.383116883116883 59 3 34 4 83 135 1292 1234 Chlorella variabilis hypothetical protein (CHLNCDRAFT_138627) mRNA, complete cds blastn 59 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
9427731 9427731 PRJNA529241_P_NODE_24948_length_421_cov_3.572917_g22657_i0 PRJNA529241 24948 421 3.572917 15.04198057 Auxenochlorella protothecoides 3075 Plants Plants 630 4.0899999999999984e-176   NTclustered gi|440136375|gb|JX857664.1| 3075 g22657 i0 97.832 47.0593824228028 369 1 88 3 53 421 388 27 Auxenochlorella protothecoides strain 0710 clone CHLPROCpK12 large subunit ribosomal RNA, partial sequence blastn 19812 630 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
11977518 11977518 PRJNA529241_P_NODE_157970_length_182_cov_1.344828_g155648_i0 PRJNA529241 157970 182 1.344828 2.44758696 Auxenochlorella protothecoides 3075 Plants Plants 337 3.82e-88   NTclustered gi|741870561|ref|NC_026009.1| 3075 g155648 i0 100 38.1923076923077 182 0 100 0 1 182 32661 32480 Auxenochlorella protothecoides mitochondrion, complete genome blastn 6951 337 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
11977520 11977520 PRJNA529241_P_NODE_158010_length_182_cov_1.344828_g155688_i0 PRJNA529241 158010 182 1.344828 2.44758696 Jenufa minuta 993092 Plants Plants 337 3.82e-88   NTclustered gi|959124355|ref|NC_028582.1| 993092 g155688 i0 100 99.6373626373626 182 0 100 0 1 182 46160 46341 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 18134 337 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
14527608 14527608 PRJNA529241_P_NODE_155712_length_183_cov_1.869863_g153390_i0 PRJNA529241 155712 183 1.869863 3.42184929 Jenufa minuta 993092 Plants Plants 333 4.97e-87   NTclustered gi|959124355|ref|NC_028582.1| 993092 g153390 i0 99.454 60.8087431693989 183 1 100 0 1 183 34814 34632 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 11128 333 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
15803471 15803471 PRJNA529241_P_NODE_423033_length_167_cov_1.130769_g420711_i0 PRJNA529241 423033 167 1.130769 1.88838423 Haematococcus lacustris 44745 Plants Plants 230 6.029999999999999e-56   NTclustered gi|1279575454|gb|MF683078.1| 44745 g420711 i0 92.025 442.922155688623 163 13 98 0 1 163 3843 3681 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 73968 230 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
17694660 17694660 PRJNA529241_P_NODE_7854_length_1081_cov_3.011494_g6616_i0 PRJNA529241 7854 1081 3.011494 32.55425014 Ulva 3118 Plants Plants 1181 0   NTclustered gi|2095862465|gb|MN853879.1| 3117 g6616 i0 86.761 110.894542090657 1065 136 98 5 19 1081 24427 23366 Ulva prolifera chloroplast, complete genome blastn 119877 1192 0.990771812080537 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva prolifera
18352329 18352329 PRJNA529241_P_NODE_422695_length_167_cov_1.453846_g420373_i0 PRJNA529241 422695 167 1.453846 2.42792282 Jenufa minuta 993092 Plants Plants 274 2.75e-69   NTclustered gi|959124355|ref|NC_028582.1| 993092 g420373 i0 100 101.017964071856 148 0 89 0 20 167 45740 45887 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 16870 274 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
22175683 22175683 PRJNA529241_P_NODE_173898_length_175_cov_1.695652_g171576_i0 PRJNA529241 173898 175 1.695652 2.967391 Jenufa minuta 993092 Plants Plants 217 4.94e-52   NTclustered gi|1829768154|ref|NC_046780.1| 993092 g171576 i0 89.773 1.38285714285714 176 8 100 6 1 175 21660 21494 Jenufa minuta culture CAUP:H8102 mitochondrion, complete genome blastn 242 217 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
24724471 24724471 PRJNA529241_P_NODE_13340_length_674_cov_6.676609_g11453_i0 PRJNA529241 13340 674 6.676609 45.00034466 Jenufa minuta 993092 Plants Plants 1243 0   NTclustered gi|959124355|ref|NC_028582.1| 993092 g11453 i0 100 135.43175074184 673 0 99 0 1 673 103484 104156 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 91281 1243 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;