RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

32 rows where analysis = "blastn", bioproject = "PRJNA529224" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 32 ✖

tax_clade 1

bioproject 1

  • PRJNA529224 · 32 ✖

analysis 1

  • blastn · 32 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
497998 497998 PRJNA529224_S_NODE_1521_length_172_cov_10.923077_g1514_i0 PRJNA529224 1521 172 10.923077 18.78769244 Paramecium caudatum 5885 SAR_Eukaryotes SAR_Eukaryotes 313 5.989999999999998e-81   NTclustered gi|519419874|gb|KF287714.1| 5885 g1514 i0 99.419 99.6686046511628 172 1 100 0 1 172 796 625 Paramecium caudatum isolate 4_c large subunit ribosomal RNA gene, partial sequence blastn 17143 313 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium caudatum
498000 498000 PRJNA529224_S_NODE_1641_length_163_cov_32.597015_g1634_i0 PRJNA529224 1641 163 32.597015 53.13313445 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 207 2.74e-49   NTclustered gi|1004125725|gb|KU761582.1| 153251 g1634 i0 94.118 85.6134969325153 136 8 83 0 4 139 6766 6901 Cryptocaryon irritans isolate ND1410 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, and intergenic spacer, complete sequence blastn 13955 207 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
498014 498014 PRJNA529224_S_NODE_61_length_521_cov_288.430894_g56_i0 PRJNA529224 61 521 288.430894 1502.72495774 Opisthonecta sp. FG-2015 1607889 SAR_Eukaryotes SAR_Eukaryotes 776 0   NTclustered gi|759083562|gb|KM222179.1| 1607889 g56 i0 93.666 100.487523992322 521 30 99 3 2 521 914 1432 Opisthonecta sp. FG-2015 voucher SZ2011052301 large subunit ribosomal RNA gene, partial sequence blastn 52354 776 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Opisthonecta Opisthonecta sp. FG-2015
2389977 2389977 PRJNA529224_S_NODE_1122_length_197_cov_7.184524_g1115_i0 PRJNA529224 1122 197 7.184524 14.15351228 Paramecium 5884 SAR_Eukaryotes SAR_Eukaryotes 346 6.99e-91   NTclustered gi|175585|gb|M19218.1|PARRRMPC 5885 g1115 i0 98.964 97.243654822335 193 2 98 0 1 193 241 49 P.caudatum 28S large subunit rRNA, 5' end blastn 19157 346 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium caudatum
3048973 3048973 PRJNA529224_S_NODE_1323_length_183_cov_12.266234_g1316_i0 PRJNA529224 1323 183 12.266234 22.44720822 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 110 9.12e-20   NTclustered gi|220966760|gb|FJ545743.1| 94289 g1316 i0 86.408 1.98360655737705 103 11 56 2 80 182 7286 7385 Sterkiella histriomuscorum 17S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence; macronuclear blastn 363 110 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
3048980 3048980 PRJNA529224_S_NODE_1583_length_167_cov_7.550725_g1576_i0 PRJNA529224 1583 167 7.550725 12.60971075 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 303 3.5e-78   NTclustered gi|1389430803|gb|MH341631.1| 1938391 g1576 i0 99.401 9.31137724550898 167 1 100 0 1 167 822 656 Chilodonella hexasticha strain C. hexasticha SC large subunit ribosomal RNA gene, partial sequence blastn 1555 303 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
4324912 4324912 PRJNA529224_S_NODE_1424_length_178_cov_6.785235_g1417_i0 PRJNA529224 1424 178 6.785235 12.0777183 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 257 2.97e-64   NTclustered gi|1389430803|gb|MH341631.1| 1938391 g1417 i0 92.697 7.8876404494382 178 13 100 0 1 178 1922 2099 Chilodonella hexasticha strain C. hexasticha SC large subunit ribosomal RNA gene, partial sequence blastn 1404 257 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
4942726 4942726 PRJNA529224_S_NODE_1924_length_151_cov_15.024590_g1917_i0 PRJNA529224 1924 151 15.02459 22.6871309 Peniculida 33825 SAR_Eukaryotes SAR_Eukaryotes 276 6.72e-70   NTclustered gi|1127253261|gb|KX669631.1| 1201934 g1917 i0 100 98.6754966887417 149 0 99 0 3 151 2432 2580 Paramecium chlorelligerum small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14900 276 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium chlorelligerum
5601782 5601782 PRJNA529224_S_NODE_1885_length_153_cov_5.314516_g1878_i0 PRJNA529224 1885 153 5.314516 8.13120948 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 141 2.6e-29   NTclustered gi|1004125725|gb|KU761582.1| 153251 g1878 i0 89.908 5.0718954248366 109 11 71 0 1 109 156 48 Cryptocaryon irritans isolate ND1410 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, and intergenic spacer, complete sequence blastn 776 141 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
5601785 5601785 PRJNA529224_S_NODE_205_length_370_cov_12.724340_g198_i0 PRJNA529224 205 370 12.72434 47.080058 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 527 4.7899999999999985e-145   NTclustered gi|194245783|gb|EU828456.1| 5888 g198 i0 96.825 71.0594594594595 315 10 85 0 56 370 1987 1673 Paramecium tetraurelia large subunit ribosomal RNA gene, complete sequence blastn 26292 527 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
6875669 6875669 PRJNA529224_S_NODE_1646_length_163_cov_9.037313_g1639_i0 PRJNA529224 1646 163 9.037313 14.73082019 Frontonia magna 1346493 SAR_Eukaryotes SAR_Eukaryotes 219 1.2699999999999999e-52   NTclustered gi|742270311|gb|KJ475277.1| 1346493 g1639 i0 92.308 93.441717791411 156 8 94 4 10 163 912 1065 Frontonia magna isolate b036L large subunit ribosomal RNA gene, partial sequence blastn 15231 219 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Frontoniidae Frontonia Frontonia magna
8150980 8150980 PRJNA529224_S_NODE_1067_length_201_cov_9.447674_g1060_i0 PRJNA529224 1067 201 9.447674 18.98982474 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 311 2.61e-80   NTclustered gi|194245783|gb|EU828456.1| 5888 g1060 i0 94.527 58.9502487562189 201 11 100 0 1 201 2419 2619 Paramecium tetraurelia large subunit ribosomal RNA gene, complete sequence blastn 11849 311 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
8151003 8151003 PRJNA529224_S_NODE_567_length_259_cov_55.495652_g560_i0 PRJNA529224 567 259 55.495652 143.73373868 Opisthonecta sp. FG-2015 1607889 SAR_Eukaryotes SAR_Eukaryotes 366 7.42e-97   NTclustered gi|759083562|gb|KM222179.1| 1607889 g560 i0 92.578 96.1621621621622 256 17 99 2 3 258 1717 1464 Opisthonecta sp. FG-2015 voucher SZ2011052301 large subunit ribosomal RNA gene, partial sequence blastn 24906 366 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Opisthonecta Opisthonecta sp. FG-2015
8767475 8767475 PRJNA529224_S_NODE_1347_length_182_cov_8.267974_g1340_i0 PRJNA529224 1347 182 8.267974 15.04771268 Paramecium 5884 SAR_Eukaryotes SAR_Eukaryotes 316 4.97e-82   NTclustered gi|126364057|dbj|AB252003.1| 5885 g1340 i0 98.333 98.9010989010989 180 3 99 0 1 180 395 574 Paramecium caudatum gene for 18S ribosomal RNA, partial sequence, strain: Isn4 blastn 18000 316 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium caudatum
8767483 8767483 PRJNA529224_S_NODE_1667_length_162_cov_22.962406_g1660_i0 PRJNA529224 1667 162 22.962406 37.19909772 Sessilida 1974272 SAR_Eukaryotes SAR_Eukaryotes 298 1.57e-76   NTclustered gi|10930|emb|X56531.1| 6026 g1660 i0 100 99.2037037037037 161 0 99 0 1 161 540 380 O.henneguyi small subunit ribosomal RNA gene blastn 16071 298 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Opisthonecta Opisthonecta henneguyi
8767487 8767487 PRJNA529224_S_NODE_1807_length_156_cov_5.015748_g1800_i0 PRJNA529224 1807 156 5.015748 7.82456688 root 1 Root_unresolved Root_unresolved 224 2.57e-54   NTclustered gi|759083543|gb|KM222160.1| 5980 g1800 i0 92.903 87.8846153846154 155 9 99 2 3 156 1528 1681 Colpoda inflata voucher SXK2011071402 large subunit ribosomal RNA gene, partial sequence blastn 13710 224 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda inflata
9426224 9426224 PRJNA529224_S_NODE_268_length_346_cov_313.022082_g261_i0 PRJNA529224 268 346 313.022082 1083.05640372 uncultured Peritrichia 282477 SAR_Eukaryotes SAR_Eukaryotes 438 2.149999999999999e-118   NTclustered gi|380236175|gb|JQ743685.1| 282477 g261 i0 89.625 100.526011560694 347 33 100 3 1 346 1224 1568 Uncultured peritrich ciliate clone GDH_F6 18S ribosomal RNA gene, partial sequence blastn 34782 438 1 Eukaryota Sar   Ciliophora Oligohymenophorea       uncultured Peritrichia
9426235 9426235 PRJNA529224_S_NODE_768_length_228_cov_7.839196_g761_i0 PRJNA529224 768 228 7.839196 17.87336688 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 370 4.94e-98   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g761 i0 96.035 4.92105263157895 227 9 99 0 1 227 658 432 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 1122 370 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
10043018 10043018 PRJNA529224_S_NODE_1528_length_171_cov_12.366197_g1521_i0 PRJNA529224 1528 171 12.366197 21.14619687 root 1 Root_unresolved Root_unresolved 313 5.95e-81   NTclustered gi|2476014522|pdb|7XD6|N 5911 g1521 i0 100 55.2222222222222 169 0 99 0 3 171 411 243 Chain N, The Tet-S2 state with a pseudoknotted 4-way junction molecule of co-transcriptional folded wild-type Tetrahymena group I intron with 30nt 3'/5'-exon (intron and 3'-exon) blastn 9443 313 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
10043020 10043020 PRJNA529224_S_NODE_1648_length_163_cov_5.514925_g1641_i0 PRJNA529224 1648 163 5.514925 8.98932775 Litostomatea 5988 SAR_Eukaryotes SAR_Eukaryotes 165 1.67e-36   NTclustered gi|375305429|gb|JF975389.1| 1197334 g1641 i0 85.185 29.3374233128834 162 22 99 2 2 163 1362 1203 Amphileptus marinus isolate PHB2007053102 28S ribosomal RNA gene, partial sequence blastn 4782 165 1 Eukaryota Sar   Ciliophora Litostomatea Pleurostomatida Amphileptidae Amphileptus Amphileptus marinus
10702010 10702010 PRJNA529224_S_NODE_529_length_266_cov_541.717300_g522_i0 PRJNA529224 529 266 541.7173 1440.968018 uncultured apostome ciliate 1239304 SAR_Eukaryotes SAR_Eukaryotes 453 5.71e-123   NTclustered gi|408358437|gb|JX417899.1| 1239304 g522 i0 97.378 2396.66165413534 267 5 100 2 1 266 424 689 Uncultured apostome ciliate clone 4-4_Cente-D4 18S ribosomal RNA gene, partial sequence blastn 637512 453 1 Eukaryota Sar   Ciliophora Oligohymenophorea Apostomatida     uncultured apostome ciliate
13868294 13868294 PRJNA529224_S_NODE_51_length_538_cov_267.925344_g46_i0 PRJNA529224 51 538 267.925344 1441.43835072 root 1 Root_unresolved Root_unresolved 789 0   NTclustered gi|363412127|gb|JN120201.1| 6026 g46 i0 93.633 99.1914498141264 534 25 99 7 1 532 448 974 Opisthonecta henneguyi isolate 43Opisthonectau1S1S2 18S ribosomal RNA gene, partial sequence blastn 53365 795 0.992452830188679 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Opisthonecta Opisthonecta henneguyi
14526887 14526887 PRJNA529224_S_NODE_1232_length_187_cov_24.259494_g1225_i0 PRJNA529224 1232 187 24.259494 45.36525378 uncultured ciliate 187299 SAR_Eukaryotes SAR_Eukaryotes 329 6.6e-86   NTclustered gi|299789532|gb|GU067868.1| 187299 g1225 i0 98.396 100.417112299465 187 3 100 0 1 187 333 519 Uncultured ciliate clone ESS270406.027 18S ribosomal RNA gene, partial sequence blastn 18778 329 1 Eukaryota Sar   Ciliophora         uncultured ciliate
17075310 17075310 PRJNA529224_S_NODE_514_length_270_cov_9.543568_g507_i0 PRJNA529224 514 270 9.543568 25.7676336 Paramecium caudatum 5885 SAR_Eukaryotes SAR_Eukaryotes 477 3.4499999999999986e-130   NTclustered gi|519419874|gb|KF287714.1| 5885 g507 i0 98.519 97.5851851851852 270 4 100 0 1 270 349 618 Paramecium caudatum isolate 4_c large subunit ribosomal RNA gene, partial sequence blastn 26348 477 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium caudatum
17075313 17075313 PRJNA529224_S_NODE_674_length_240_cov_14.303318_g667_i0 PRJNA529224 674 240 14.303318 34.3279632 Opisthonecta sp. FG-2015 1607889 SAR_Eukaryotes SAR_Eukaryotes 392 1.1199999999999997e-104   NTclustered gi|759083562|gb|KM222179.1| 1607889 g667 i0 96.234 8.14583333333333 239 9 99 0 1 239 634 396 Opisthonecta sp. FG-2015 voucher SZ2011052301 large subunit ribosomal RNA gene, partial sequence blastn 1955 392 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Opisthonecta Opisthonecta sp. FG-2015
18349513 18349513 PRJNA529224_S_NODE_735_length_232_cov_16.384236_g728_i0 PRJNA529224 735 232 16.384236 38.01142752 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 283 6.76e-72   NTclustered gi|194245783|gb|EU828456.1| 5888 g728 i0 89.732 33.6034482758621 224 19 96 3 10 232 1928 2148 Paramecium tetraurelia large subunit ribosomal RNA gene, complete sequence blastn 7796 283 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
18966056 18966056 PRJNA529224_S_NODE_1035_length_204_cov_9.000000_g1028_i0 PRJNA529224 1035 204 9 18.36 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 377 2.59e-100   NTclustered gi|13194559|gb|AF300281.1|AF300281 151077 g1028 i0 100 99.5294117647059 204 0 100 0 1 204 1190 1393 Chilodonella uncinata clone 1 18S small subunit ribosomal RNA gene, partial sequence blastn 20304 377 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
20240948 20240948 PRJNA529224_S_NODE_1036_length_204_cov_6.497143_g1029_i0 PRJNA529224 1036 204 6.497143 13.25417172 Paramecium 5884 SAR_Eukaryotes SAR_Eukaryotes 361 2.6e-95   NTclustered gi|126364057|dbj|AB252003.1| 5885 g1029 i0 99.005 98.5343137254902 201 2 99 0 2 202 181 381 Paramecium caudatum gene for 18S ribosomal RNA, partial sequence, strain: Isn4 blastn 20101 361 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium caudatum
21516458 21516458 PRJNA529224_S_NODE_497_length_276_cov_11.526316_g490_i0 PRJNA529224 497 276 11.526316 31.81263216 root 1 Root_unresolved Root_unresolved 464 2.75e-126   NTclustered gi|2470325693|pdb|7YG8|N 5890 g490 i0 100 49.25 251 0 91 0 26 276 6 256 Chain N, RNA (387-MER) blastn 13593 464 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena  
22174774 22174774 PRJNA529224_S_NODE_1798_length_156_cov_7.322835_g1791_i0 PRJNA529224 1798 156 7.322835 11.4236226 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 250 4.25e-62   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g1791 i0 95.513 4.02564102564103 156 7 100 0 1 156 220 65 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 628 250 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
22791605 22791605 PRJNA529224_S_NODE_1898_length_152_cov_21.276423_g1891_i0 PRJNA529224 1898 152 21.276423 32.34016296 root 1 Root_unresolved Root_unresolved 276 6.770000000000001e-70   NTclustered gi|530758508|gb|KF524430.1| 6026 g1891 i0 99.342 98.5789473684211 152 1 100 0 1 152 467 316 Opisthonecta henneguyi 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14984 276 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Opisthonecta Opisthonecta henneguyi
23450334 23450334 PRJNA529224_S_NODE_1319_length_183_cov_29.155844_g1312_i0 PRJNA529224 1319 183 29.155844 53.35519452 Opisthonecta sp. FG-2015 1607889 SAR_Eukaryotes SAR_Eukaryotes 339 1.07e-88   NTclustered gi|759083562|gb|KM222179.1| 1607889 g1312 i0 100 98.6174863387978 183 0 100 0 1 183 633 815 Opisthonecta sp. FG-2015 voucher SZ2011052301 large subunit ribosomal RNA gene, partial sequence blastn 18047 339 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Opisthonecta Opisthonecta sp. FG-2015

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;