RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA529224" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA529224 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
498005 498005 PRJNA529224_S_NODE_1881_length_153_cov_10.508065_g1874_i0 PRJNA529224 1881 153 10.508065 16.07733945 Trachelomonas planctonica 304862 Euglenozoa other_Eukaryota 230 5.39e-56   NTclustered gi|209362314|gb|AY359954.2| 304862 g1874 i0 94.04 97.921568627451 151 9 99 0 3 153 1376 1526 Trachelomonas planctonica strain WT1 large subunit ribosomal RNA gene, partial sequence blastn 14982 230 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Trachelomonas Trachelomonas planctonica
1773168 1773168 PRJNA529224_S_NODE_1622_length_164_cov_9.474074_g1615_i0 PRJNA529224 1622 164 9.474074 15.53748136 Euglena viridis 3040 Euglenozoa other_Eukaryota 241 2.72e-59   NTclustered gi|20386044|gb|AF445460.1| 3040 g1615 i0 94.34 2.78658536585366 159 5 95 4 10 164 201 359 Euglena viridis 18S small subunit ribosomal RNA gene, partial sequence blastn 457 241 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena viridis
2389990 2389990 PRJNA529224_S_NODE_1802_length_156_cov_5.771654_g1795_i0 PRJNA529224 1802 156 5.771654 9.00378024 Euglenales 86650 Euglenozoa other_Eukaryota 231 1.5399999999999998e-56   NTclustered gi|20386044|gb|AF445460.1| 3040 g1795 i0 93.59 90.8141025641026 156 8 99 2 1 154 2041 1886 Euglena viridis 18S small subunit ribosomal RNA gene, partial sequence blastn 14167 231 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena viridis
8767481 8767481 PRJNA529224_S_NODE_1627_length_164_cov_4.207407_g1620_i0 PRJNA529224 1627 164 4.207407 6.90014748 Naegleria 5761 Heterolobosea other_Eukaryota 250 4.52e-62   NTclustered gi|2618963742|gb|OR769034.1| 5762 g1620 i0 94.479 10.1280487804878 163 8 99 1 1 163 5622 5461 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 1661 250 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
11976738 11976738 PRJNA529224_S_NODE_1750_length_158_cov_8.062016_g1743_i0 PRJNA529224 1750 158 8.062016 12.73798528 Euglenaria sp. Jilnal030207G 1685848 Euglenozoa other_Eukaryota 226 7.269999999999999e-55   NTclustered gi|944273834|gb|KT304941.1| 1685848 g1743 i0 92.405 97.746835443038 158 12 100 0 1 158 625 782 Euglenaria sp. Jilnal030207G large subunit ribosomal RNA gene, partial sequence blastn 15444 226 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglenaria Euglenaria sp. Jilnal030207G
17692370 17692370 PRJNA529224_S_NODE_994_length_207_cov_12.067416_g987_i0 PRJNA529224 994 207 12.067416 24.97955112 Lepocinclis 66846 Euglenozoa other_Eukaryota 250 5.98e-62   NTclustered gi|209362297|gb|AY130815.2| 66847 g987 i0 88.517 71.7294685990338 209 20 99 3 1 206 2072 2279 Lepocinclis buetschlii strain UTEX 523 voucher University of Texas Culture Collection (UTEX) 523 large subunit ribosomal RNA gene, partial sequence blastn 14848 250 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Phacaceae Lepocinclis Lepocinclis buetschlii
24066391 24066391 PRJNA529224_S_NODE_1019_length_205_cov_8.460227_g1012_i0 PRJNA529224 1019 205 8.460227 17.34346535 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 324 3.44e-84   NTclustered gi|11037201|gb|AF208879.1|AF208879 140242 g1012 i0 95.122 157.268292682927 205 10 100 0 1 205 774 978 Cruzella marina large subunit ribosomal RNA gene, partial sequence blastn 32240 327 0.990825688073395 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Cruzella Cruzella marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;