RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA529224" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA529224 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1773176 1773176 PRJNA529224_S_NODE_542_length_264_cov_17.553191_g535_i0 PRJNA529224 542 264 17.553191 46.34042424 Vannella simplex 197532 Discosea other_Eukaryota 405 1.61e-108   NTclustered gi|284192600|gb|GQ265398.1| 197532 g535 i0 98.684 86.6590909090909 228 3 86 0 37 264 444 671 Vannella simplex strain Ladoga Cl 12/2 clone A144.1 18S ribosomal RNA gene, partial sequence blastn 22878 405 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
5601777 5601777 PRJNA529224_S_NODE_1605_length_165_cov_13.014706_g1598_i0 PRJNA529224 1605 165 13.014706 21.4742649 Vannella simplex 197532 Discosea other_Eukaryota 285 1.25e-72   NTclustered gi|284192521|gb|GQ265484.1| 197532 g1598 i0 98.16 97.4181818181818 163 3 99 0 2 164 363 201 Vannella simplex strain Ladoga Cl 12/2 clone A144.5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 16074 285 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
6875673 6875673 PRJNA529224_S_NODE_1806_length_156_cov_5.055118_g1799_i0 PRJNA529224 1806 156 5.055118 7.88598408 Cochliopodium minus 313997 Discosea other_Eukaryota 283 4.1899999999999994e-72   NTclustered gi|330902862|gb|JF298257.1| 313997 g1799 i0 100 17.9551282051282 153 0 98 0 1 153 291 443 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 2801 283 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
13251842 13251842 PRJNA529224_S_NODE_1251_length_186_cov_5.006369_g1244_i0 PRJNA529224 1251 186 5.006369 9.31184634 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 176 9.04e-40   NTclustered gi|300078498|gb|GU001160.1| 5755 g1244 i0 90.37 2.91935483870968 135 12 72 1 53 186 6888 6754 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 543 176 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;