RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA527965" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA527965 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1772026 1772026 PRJNA527965_S_NODE_2282_length_255_cov_18.845455_g2199_i0 PRJNA527965 2282 255 18.845455 48.05591025 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 405 1.54e-108   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g2199 i0 95.312 146.156862745098 256 11 100 1 1 255 1596264 1596519 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 37270 405 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
4323812 4323812 PRJNA527965_S_NODE_3464_length_204_cov_3.928994_g3381_i0 PRJNA527965 3464 204 3.928994 8.01514776 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 243 9.84e-60   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g3381 i0 91.16 103.666666666667 181 13 88 3 1 179 1594449 1594270 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 21148 243 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
6874524 6874524 PRJNA527965_S_NODE_2586_length_239_cov_2.333333_g2503_i0 PRJNA527965 2586 239 2.333333 5.57666587 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 215 2.59e-51   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g2503 i0 92.667 392.364016736402 150 9 62 2 91 239 1596780 1596632 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 93775 215 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
6874549 6874549 PRJNA527965_S_NODE_3646_length_200_cov_1.115152_g3563_i0 PRJNA527965 3646 200 1.115152 2.230304 Fibrobacterota bacterium 2052160 Bacteria Bacteria 207 3.5e-49   NTclustered gi|1958056460|gb|CP064986.1| 2052160 g3563 i0 87.047 1.915 193 14 94 11 13 200 2061351 2061537 Fibrobacteres bacterium isolate Fred_18-Q3-R57-64_MAXAC.109_cln chromosome, complete genome blastn 383 207 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
9425155 9425155 PRJNA527965_S_NODE_4728_length_172_cov_3.759124_g4645_i0 PRJNA527965 4728 172 3.759124 6.46569328 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 174 2.95e-39   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g4645 i0 86.061 11.6627906976744 165 20 95 3 10 172 1595465 1595302 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 2006 174 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
20899054 20899054 PRJNA527965_S_NODE_5877_length_154_cov_3.084034_g5794_i0 PRJNA527965 5877 154 3.084034 4.74941236 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 161 2.01e-35   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g5794 i0 90.833 1.54545454545455 120 11 78 0 35 154 1595174 1595293 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 238 161 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;