RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJNA527965" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 21 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA527965 · 21 ✖

analysis 1

  • blastn · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1772033 1772033 PRJNA527965_S_NODE_2562_length_240_cov_5.048780_g2479_i0 PRJNA527965 2562 240 5.04878 12.117072 uncultured Chytridiomycota 175247 Fungi Fungi 206 1.57e-48   NTclustered gi|694198307|gb|KM067413.1| 175247 g2479 i0 99.123 43.6958333333333 114 1 48 0 127 240 545 658 Uncultured Chytridiomycota clone DH134F11 18S ribosomal RNA gene, partial sequence blastn 10487 206 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota
2389829 2389829 PRJNA527965_S_NODE_3282_length_210_cov_6.577143_g3199_i0 PRJNA527965 3282 210 6.577143 13.8120003 Nowakowskiella 109880 Fungi Fungi 377 2.68e-100   NTclustered gi|1866582484|gb|MT730659.1| 109881 g3199 i0 99.052 99.0333333333333 211 1 100 1 1 210 2979 2769 Nowakowskiella elegans isolate JEL0046 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20797 377 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella elegans
3665607 3665607 PRJNA527965_S_NODE_703_length_419_cov_26.966146_g621_i0 PRJNA527965 703 419 26.966146 112.98815174 Spizellomycetaceae 34479 Fungi Fungi 627 5.27e-175   NTclustered gi|311235603|ref|NG_027618.1| 109760 g621 i0 93.78 99.7923627684964 418 25 99 1 1 418 2015 2431 Spizellomyces punctatus ATCC 48900 28S rRNA gene, partial sequence; from TYPE material blastn 41813 632 0.992088607594937 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
8149836 8149836 PRJNA527965_S_NODE_1627_length_303_cov_2.705224_g1544_i0 PRJNA527965 1627 303 2.705224 8.19682872 Synchytrium sp. 1971732 Fungi Fungi 93.5 1.66e-14   NTclustered gi|1168020523|gb|KY800404.1| 1971732 g1544 i0 83.168 0.333333333333333 101 17 33 0 34 134 1006 906 Synchytrium sp. voucher BPI 893319 large subunit ribosomal RNA gene, partial sequence blastn 101 93.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium sp.
8149882 8149882 PRJNA527965_S_NODE_3967_length_190_cov_14.012903_g3884_i0 PRJNA527965 3967 190 14.012903 26.6245157 uncultured Chytridiomycota 175247 Fungi Fungi 329 6.730000000000001e-86   NTclustered gi|261871809|gb|GU055563.1| 175247 g3884 i0 98.396 95.8315789473684 187 3 98 0 4 190 1574 1388 Uncultured Chytridiomycota clone NG_N_C01 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18208 329 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota
8149899 8149899 PRJNA527965_S_NODE_4987_length_167_cov_19.522727_g4904_i0 PRJNA527965 4987 167 19.522727 32.60295409 Nowakowskiella sp. 2012159 Fungi Fungi 148 1.7399999999999999e-31   NTclustered gi|1866582490|gb|MT730665.1| 2012159 g4904 i0 82.738 98.1077844311377 168 28 100 1 1 167 4110 3943 Nowakowskiella sp. isolate JEL0078 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16384 148 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp.
8767309 8767309 PRJNA527965_S_NODE_4207_length_184_cov_15.838926_g4124_i0 PRJNA527965 4207 184 15.838926 29.14362384 Chytridiomycetes 451435 Fungi Fungi 324 3.01e-84   NTclustered gi|362409903|gb|JN941013.1| 109760 g4124 i0 98.37 100.027173913043 184 3 100 0 1 184 671 854 Spizellomyces punctatus 28S ribosomal RNA (LSU) gene, partial sequence blastn 18405 324 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
9425176 9425176 PRJNA527965_S_NODE_6208_length_151_cov_1.224138_g6125_i0 PRJNA527965 6208 151 1.224138 1.84844838 Arkaya lepida 1134058 Fungi Fungi 252 1.13e-62   NTclustered gi|82398550|gb|DQ273814.1| 1134058 g6125 i0 96.689 7.43708609271523 151 5 100 0 1 151 1775 1925 Karlingiomyces sp. JEL93 isolate AFTOL-ID 629 28S ribosomal RNA gene, partial sequence blastn 1123 252 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Arkaya Arkaya lepida
10042846 10042846 PRJNA527965_S_NODE_388_length_517_cov_4.792531_g308_i0 PRJNA527965 388 517 4.792531 24.77738527 Nowakowskiella 109880 Fungi Fungi 455 3.3e-123   NTclustered gi|82398445|gb|DQ273798.1| 109881 g308 i0 85.651 86 453 41 86 10 68 514 1323 1757 Nowakowskiella sp. JEL127 isolate AFTOL-ID 146 28S ribosomal RNA gene, partial sequence blastn 44462 459 0.991285403050109 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella elegans
10042851 10042851 PRJNA527965_S_NODE_4508_length_177_cov_2.253521_g4425_i0 PRJNA527965 4508 177 2.253521 3.98873217 Nowakowskiella 109880 Fungi Fungi 257 2.9500000000000003e-64   NTclustered gi|1419337825|gb|MH590076.1| 110078 g4425 i0 93.22 100.039548022599 177 8 100 1 1 177 721 549 Nowakowskiella hemisphaerospora voucher GHJ13 large subunit ribosomal RNA gene, partial sequence blastn 17707 257 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella hemisphaerospora
10700896 10700896 PRJNA527965_S_NODE_5069_length_166_cov_3.229008_g4986_i0 PRJNA527965 5069 166 3.229008 5.36015328 Nowakowskiella sp. JH SA 546783 Fungi Fungi 283 4.53e-72   NTclustered gi|194241383|gb|EU828510.1| 546783 g4986 i0 98.148 99.1024096385542 162 3 98 0 1 162 162 1 Nowakowskiella sp. JH SA 28S large subunit ribosomal RNA gene, partial sequence blastn 16451 283 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp. JH SA
11975659 11975659 PRJNA527965_S_NODE_4250_length_183_cov_4.202703_g4167_i0 PRJNA527965 4250 183 4.202703 7.69094649 Nowakowskiella sp. 2012159 Fungi Fungi 318 1.39e-82   NTclustered gi|1866582490|gb|MT730665.1| 2012159 g4167 i0 98.343 75.0273224043716 181 3 99 0 3 183 4372 4192 Nowakowskiella sp. isolate JEL0078 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13730 318 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp.
13868103 13868103 PRJNA527965_S_NODE_2271_length_256_cov_18.253394_g2188_i0 PRJNA527965 2271 256 18.253394 46.72868864 Neocallimastigaceae 29007 Fungi Fungi 220 6.03e-53   NTclustered gi|55859492|emb|AJ864475.1| 301046 g2188 i0 99.18 47.84765625 122 1 48 0 8 129 3782 3661 Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA, clone V5-1 blastn 12249 222 0.990990990990991 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Orpinomyces Orpinomyces sp. OUS1
14525829 14525829 PRJNA527965_S_NODE_872_length_386_cov_12.783476_g789_i0 PRJNA527965 872 386 12.783476 49.34421736 Spizellomyces punctatus 109760 Fungi Fungi 344 5.43e-90   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g789 i0 92.857 59.8937823834197 238 16 61 1 150 386 4085 3848 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 23119 344 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
15799555 15799555 PRJNA527965_S_NODE_5573_length_158_cov_6.065041_g5490_i0 PRJNA527965 5573 158 6.065041 9.58276478 Spizellomyces punctatus 109760 Fungi Fungi 195 2.05e-45   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g5490 i0 96.61 75.6772151898734 118 3 74 1 42 158 4028 3911 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 11957 195 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
18348366 18348366 PRJNA527965_S_NODE_1015_length_365_cov_11.221212_g932_i0 PRJNA527965 1015 365 11.221212 40.9574238 Spizellomyces punctatus 109760 Fungi Fungi 344 5.1e-90   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g932 i0 94.248 61.8657534246575 226 12 62 1 1 225 3848 4073 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 22581 344 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
18348433 18348433 PRJNA527965_S_NODE_4255_length_183_cov_3.513514_g4172_i0 PRJNA527965 4255 183 3.513514 6.42973062 Nowakowskiella sp. 2012159 Fungi Fungi 326 8.32e-85   NTclustered gi|1866582490|gb|MT730665.1| 2012159 g4172 i0 98.901 85.8907103825137 182 2 99 0 1 182 2756 2937 Nowakowskiella sp. isolate JEL0078 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15718 326 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp.
18965934 18965934 PRJNA527965_S_NODE_5035_length_167_cov_1.477273_g4952_i0 PRJNA527965 5035 167 1.477273 2.46704591 Chytridiaceae 4812 Fungi Fungi 198 1.7e-46   NTclustered gi|82398596|gb|DQ273831.1| 355335 g4952 i0 88.623 95.748502994012 167 14 99 4 3 167 1887 1724 Chytridium sp. JEL341 isolate AFTOL-ID 1531 28S ribosomal RNA gene, partial sequence blastn 15990 198 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Chytridium Chytridium sp. JEL341
20240817 20240817 PRJNA527965_S_NODE_716_length_416_cov_26.955381_g633_i0 PRJNA527965 716 416 26.955381 112.13438496 Paranamyces 1675849 Fungi Fungi 688 0   NTclustered gi|387155802|emb|HE806175.1| 687209 g633 i0 96.627 99.8461538461538 415 13 99 1 2 416 1874 1461 Uncultured Rhizophydiales partial 26S rRNA gene, clone Ao0Yyyy2 blastn 41536 688 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     uncultured Rhizophydiales
21516291 21516291 PRJNA527965_S_NODE_3937_length_191_cov_16.384615_g3854_i0 PRJNA527965 3937 191 16.384615 31.29461465 root 1 Root_unresolved Root_unresolved 353 4.02e-93   NTclustered gi|1866582754|gb|MT730929.1| 64517 g3854 i0 100 99.9267015706806 191 0 100 0 1 191 1610 1420 Rhizophlyctis rosea isolate KP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19086 353 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea
22173633 22173633 PRJNA527965_S_NODE_1978_length_278_cov_19.238683_g1895_i0 PRJNA527965 1978 278 19.238683 53.48353874 Nowakowskiella elegans 109881 Fungi Fungi 226 1.42e-54   NTclustered gi|82398445|gb|DQ273798.1| 109881 g1895 i0 82.979 44.6294964028777 282 17 97 20 1 271 1850 2111 Nowakowskiella sp. JEL127 isolate AFTOL-ID 146 28S ribosomal RNA gene, partial sequence blastn 12407 226 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella elegans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;