RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA527965" and tax_phylum = "Acanthocephala"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acanthocephala · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA527965 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22173687 22173687 PRJNA527965_S_NODE_4518_length_177_cov_1.774648_g4435_i0 PRJNA527965 4518 177 1.774648 3.14112696 Tegorhynchus sp. MGV-2005 317554 Acanthocephala other_Eukaryota 63.9 6.91e-6   NTclustered gi|61200833|gb|AY829092.1| 317554 g4435 i0 80 0.508474576271186 90 14 50 4 86 173 1682 1769 Illiosentis sp. MGV-2005 28S ribosomal RNA gene, partial sequence blastn 90 63.9 1 Eukaryota Opisthokonta Metazoa Acanthocephala Palaeacanthocephala Echinorhynchida Leptorhynchoididae Tegorhynchus Tegorhynchus sp. MGV-2005

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;