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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA527965" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 8 ✖

bioproject 1

  • PRJNA527965 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4323786 4323786 PRJNA527965_S_NODE_2164_length_263_cov_12.714912_g2081_i0 PRJNA527965 2164 263 12.714912 33.44021856 uncultured delta proteobacterium 34034 Bacteria Bacteria 431 2.639999999999999e-116   NTclustered gi|118041481|gb|EF074435.1| 34034 g2081 i0 96.198 92.5589353612167 263 10 100 0 1 263 674 412 Uncultured delta proteobacterium clone GASP-WC1S2_A01 16S ribosomal RNA gene, partial sequence blastn 24343 431 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
8767315 8767315 PRJNA527965_S_NODE_4567_length_176_cov_1.687943_g4484_i0 PRJNA527965 4567 176 1.687943 2.97077968 Myxococcota 2818505 Bacteria Bacteria 320 3.69e-83   NTclustered gi|118163501|gb|EF073036.1| 34034 g4484 i0 99.432 99.9659090909091 176 1 100 0 1 176 47 222 Uncultured delta proteobacterium clone GASP-WA2W3_G03 16S ribosomal RNA gene, partial sequence blastn 17594 320 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
11975600 11975600 PRJNA527965_S_NODE_1070_length_359_cov_156.898148_g987_i0 PRJNA527965 1070 359 156.898148 563.26435132 uncultured delta proteobacterium 34034 Bacteria Bacteria 630 3.429999999999999e-176   NTclustered gi|375245443|gb|JQ653850.1| 34034 g987 i0 98.599 98.3955431754875 357 3 99 2 3 359 1 355 Uncultured delta proteobacterium clone 199 16S ribosomal RNA gene, partial sequence blastn 35324 630 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
15142411 15142411 PRJNA527965_S_NODE_4232_length_184_cov_1.577181_g4149_i0 PRJNA527965 4232 184 1.577181 2.90201304 Bacteria 2 Bacteria Bacteria 117 5.49e-22   NTclustered gi|297181813|gb|GU474879.1| 710831 g4149 i0 86.667 164.885869565217 105 14 57 0 75 179 14703 14807 Uncultured delta proteobacterium HF0200_19J16 genomic sequence blastn 30339 117 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0200_19J16
16417044 16417044 PRJNA527965_S_NODE_2113_length_266_cov_331.004329_g2030_i0 PRJNA527965 2113 266 331.004329 880.47151514 Pseudomonadota 1224 Bacteria Bacteria 479 9.42e-131   NTclustered gi|202950689|emb|FM206054.1| 34034 g2030 i0 100 103.635338345865 259 0 97 0 7 265 1 259 Uncultured delta proteobacterium partial 16S rRNA gene, clone GW_1 blastn 27567 481 0.995841995841996 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
17692142 17692142 PRJNA527965_S_NODE_1094_length_356_cov_10.084112_g1011_i0 PRJNA527965 1094 356 10.084112 35.89943872 Myxococcota 2818505 Bacteria Bacteria 451 2.8400000000000004e-122   NTclustered gi|299033091|gb|GU983310.1| 34034 g1011 i0 96.691 75.8061797752809 272 8 76 1 86 356 468 739 Uncultured delta proteobacterium clone E2006TS1.08 16S ribosomal RNA gene, partial sequence blastn 26987 451 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
18965910 18965910 PRJNA527965_S_NODE_2855_length_226_cov_105.460733_g2772_i0 PRJNA527965 2855 226 105.460733 238.34125658 root 1 Root_unresolved Root_unresolved 416 6.189999999999998e-112   NTclustered gi|451917247|gb|KC451111.1| 34034 g2772 i0 100 99.5575221238938 225 0 99 0 2 226 246 22 Uncultured delta proteobacterium clone RLBp852 16S ribosomal RNA gene, partial sequence blastn 22500 416 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
20240763 20240763 PRJNA527965_S_NODE_1036_length_362_cov_124.660550_g953_i0 PRJNA527965 1036 362 124.66055 451.271191 Myxococcota 2818505 Bacteria Bacteria 606 5.839999999999998e-169   NTclustered gi|146429756|gb|EF220572.1| 34034 g953 i0 97.214 97.0718232044199 359 8 99 1 1 357 368 10 Uncultured delta proteobacterium clone FI-1M_B12 16S ribosomal RNA gene, partial sequence blastn 35140 612 0.990196078431373 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;