RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA526367" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA526367 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11975050 11975050 PRJNA526367_P_NODE_61110_length_156_cov_7.943925_g60900_i0 PRJNA526367 61110 156 7.943925 12.392523 Candidatus Manganitrophaceae bacterium 2932367 Bacteria Bacteria 219 1.2e-52   NTclustered gi|2874254047|emb|OY970371.1| 2932367 g60900 i0 92.763 90.0576923076923 152 10 97 1 2 152 2247798 2247647 MAG: Candidatus Manganitrophaceae bacterium isolate MFD03066.bin.c.2 genome assembly, chromosome: 1 blastn 14049 219 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae   Candidatus Manganitrophaceae bacterium
13250155 13250155 PRJNA526367_P_NODE_59371_length_159_cov_3.709091_g59161_i0 PRJNA526367 59371 159 3.709091 5.89745469 Nitrospira sp. 70125 Bacteria Bacteria 139 9.82e-29   NTclustered gi|2511631678|gb|CP126123.1| 70125 g59161 i0 84.028 13.2389937106918 144 23 91 0 6 149 3514067 3513924 MAG: Nitrospira sp. isolate bin_003 chromosome, complete genome blastn 2105 139 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
14524906 14524906 PRJNA526367_P_NODE_40032_length_183_cov_2.216418_g39822_i0 PRJNA526367 40032 183 2.216418 4.05604494 Nitrospira sp. 70125 Bacteria Bacteria 335 1.3799999999999996e-87   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g39822 i0 100 88.3551912568306 181 0 99 0 1 181 2094009 2094189 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 16169 335 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
17073555 17073555 PRJNA526367_P_NODE_5834_length_325_cov_3.778986_g5625_i0 PRJNA526367 5834 325 3.778986 12.2817045 uncultured Nitrospira sp. 157176 Bacteria Bacteria 176 1.74e-39   NTclustered gi|407357704|gb|JX493707.1| 157176 g5625 i0 98.98 59.08 98 1 59 0 225 322 424 521 Uncultured Nitrospira sp. clone WHs1-75 16S ribosomal RNA gene, partial sequence blastn 19201 176 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira uncultured Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;